Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq96 156 6e-33 seq5 123 3e-23 >seq96 Length=87723 Score = 156 bits (172), Expect = 6e-33 Identities = 299/439 (68%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| ||||| || ||||||||||| || || || ||||| ||||||| || || Sbjct 51979 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 52038 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| ||||| ||||||| | || || || | | || | | || | Sbjct 52039 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 52098 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | ||| || ||||| || ||||| |||||||| | |||||| || | || Sbjct 52099 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 52158 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | ||| | |||||| || ||||||||||| |||||| || || ||||| || ||| Sbjct 52159 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 52218 Query 39566 GATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 |||| | | || | || | | | ||| || || || |||||||| | Sbjct 52219 --TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAA 52276 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 |||| || || |||||||| | ||||||||||| || || ||||| || |||| Sbjct 52277 AGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCA 52336 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 | | |||||||| || ||||| || || | |||||||| || ||||| || |||| Sbjct 52337 TCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTT 52396 Query 39744 CTACTGCTGCAAATGCAAC 39762 | || || ||||| ||||| Sbjct 52397 CCACGGCAGCAAAAGCAAC 52415 Score = 111 bits (122), Expect = 2e-19 Identities = 224/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 || || |||||||| ||||| || | || | || || || | || || || ||| Sbjct 52552 GTCTCGATAGCATTGAAGAGGTAGTTGCGTTGAGCATGCTCCTTGATGTAGGTGTCGATT 52611 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 || ||| || |||| || ||||| || || ||| ||||| ||||||||||| || Sbjct 52612 AAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGCAA 52671 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | || |||| | ||| || || | || | || |||| || || || || || Sbjct 52672 CGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAATG 52731 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 || ||| || ||||| ||||||| | || || |||||||| |||||| || Sbjct 52732 CCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCATTC 52791 Query 40079 A---ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135 | || |||||||| | | |||||| || | ||| | ||||| || ||||| || Sbjct 52792 AGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGAAA 52851 Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || ||||| |||||||||||||| | ||| || Sbjct 52852 GAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 52883 >seq5 Length=693879 Score = 123 bits (136), Expect = 3e-23 Identities = 447/694 (64%), Gaps = 28/694 (4%) Strand=Plus/Plus Query 69538 TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACT 69597 ||| ||| || || ||||| || || ||||||| | ||| || | | | || || Sbjct 203497 TCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACG 203556 Query 69598 CGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCT 69657 || ||||| || |||||||||||||||||||| | || | ||| | | | |||| Sbjct 203557 CGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCT 203616 Query 69658 TCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 69717 || || || ||| ||| | ||| || ||||| | | ||| | ||||| || || Sbjct 203617 TCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCC 203676 Query 69718 AGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTG 69777 | || || || | | || ||||| || || || ||||| || | |||||||| ||| Sbjct 203677 AAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTG 203736 Query 69778 TTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATA 69837 || || | || | ||||| ||||| | |||||| || | || || || || | ||| Sbjct 203737 TTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATG 203796 Query 69838 TAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAG 69897 || || | |||||||| | | | || || || || ||||| || ||| Sbjct 203797 TAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCACCAGCCATCTTGGAG 203856 Query 69898 ATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGT-- 69955 || | || || || | |||||||| || ||||| ||||| || || |||||| Sbjct 203857 ATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCG 203916 Query 69956 -----TAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATG 70009 ||| |||| |||||| ||||| ||| || || || || || |||| || Sbjct 203917 ACGAGGAAGCAAGACGACAGCT-GACAT----TGAGGT---GTGCCAGCGTTGAATAGTG 203968 Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069 | || || ||||| ||||| ||| || | |||| ||| ||||| | || | Sbjct 203969 TGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCT 204028 Query 70070 CTATAT----CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGT 70125 | |||| || | | || || | ||||||||||| | ||| ||||| ||||| Sbjct 204029 CAATATTGTCTCCCCAG----ATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGC 204084 Query 70126 TCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAA 70185 || || | || || | || | || ||||| |||| ||| || || ||||| Sbjct 204085 TCGACAATCTTGCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAG 204144 Query 70186 TAGTTGTA--TGAAAAGTCTCTTTCGTAAATAAT 70217 || | || ||||| ||||| || || | ||| Sbjct 204145 TACTGATAGTTGAAA--TCTCTGTCATAGACAAT 204176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686886217873200