Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq5 304 2e-77
seq96 87.8 2e-12
seq9 86.0 8e-12
>seq5
Length=693879
Score = 304 bits (336), Expect = 2e-77
Identities = 1130/1740 (65%), Gaps = 47/1740 (3%)
Strand=Plus/Plus
Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428
|||||||| || |||||||| || ||||||| || | ||||| |||| || ||||
Sbjct 202363 TAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTG 202422
Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGAAGCGCC 110486
||| || ||| | |||| | ||| | | || |||| |||| ||||| |
Sbjct 202423 CCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACT--GGTCGATGAAAGCAC 202480
Query 110487 CCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGCGATA 110544
| || | || ||||| | | ||| | | || | |||||||||||| || ||
Sbjct 202481 CACGGTCAGCAGCCATCTGCACGACGTGTCGTTGAGA--AATTTCCCAAACAGTTTTGTA 202538
Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604
|||| ||||| || | ||||| | | ||||||||| |||||||| | | |
Sbjct 202539 GAGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAAT 202598
Query 110605 CATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTG 110664
|| | | ||||||| | | ||||| || || || | ||| || || | ||
Sbjct 202599 GATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCA 202658
Query 110665 CTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTA 110724
|||||||| || |||||||| ||| | | |||| ||||| | |||||
Sbjct 202659 GGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTA 202718
Query 110725 TGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGC 110784
|| || ||||| ||||| ||||| | || || | ||| || || || ||||| || ||
Sbjct 202719 AGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGC 202778
Query 110785 CATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC 110844
| || || ||| |||| || | ||||||||| | ||||| ||| || ||| ||
Sbjct 202779 GAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTC 202838
Query 110845 GTAGTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902
|| | || || ||||| | ||||||||||||||||||| | || | ||| |||
Sbjct 202839 CCAGAGGTCAGAA-GGCTTCACGT-CCCACATGTCAAACTGAAGAATGCCCTCGGAGGCG 202896
Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTC 110961
||||| ||||||||||| || | ||||| | | |||||||| |||| ||
Sbjct 202897 GGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAG-AGGCAGT 202955
Query 110962 CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGA 111021
|||| || || || ||||| ||||| || | || | ||| ||| ||| ||
Sbjct 202956 GAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGA 203015
Query 111022 ATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 111081
||||||| ||| | || || | || |||||||| || || || | ||||||
Sbjct 203016 CTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAAT 203075
Query 111082 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 111141
|| | ||||||||| || || || || || ||||| || || |||||
Sbjct 203076 CGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAAT 203135
Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201
|| || ||| || || ||| | || |||| || || || || | | || |
Sbjct 203136 GATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 203195
Query 111202 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGG----GCGATTGATGCCAAATTGCAAA 111257
||| ||| | | | | ||| || ||| || | || ||||| |||||||
Sbjct 203196 ---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAA 203251
Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAA 111317
|||| |||||| | | |||||| | |||||| || || | |||||| || |
Sbjct 203252 CAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGA 203311
Query 111318 TCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGG 111377
| || ||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| | |
Sbjct 203312 TTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAG 203371
Query 111378 GCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACA 111436
| | |||||||| ||||| | | || || | | ||| | | || | ||| | |
Sbjct 203372 GATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-GGCACG---A 203427
Query 111437 ATGG-CGTTGGCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493
|||| || | || | ||||| ||| |||||| ||||| || |||||||||||
Sbjct 203428 ATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCG 203487
Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACC 111552
|| ||| | || || || || || || || || | |||| ||| | |||
Sbjct 203488 CCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTT 203546
Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 111611
| ||| || |||||||||||||| || |||||||| || | || | ||| | | |
Sbjct 203547 CTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGC 203606
Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671
|| || | ||||| | || || || ||| || ||||||||||| | | ||| ||||
Sbjct 203607 ACGGA-CTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGT 203665
Query 111672 GCCATGGCT-CAAG---ATAG--ACTGCGATAGATCCCTTTCGACGCCCAGCTTGATTTA 111725
|||| |||| |||| || | | ||| || || ||| | | ||| | || | |
Sbjct 203666 GCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTT--GTTG-CCACCCTGGTCGA 203722
Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785
|||| | || ||| ||| || || |||||||| ||||| | ||||| || || |
Sbjct 203723 CATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGT 203782
Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845
| || || ||| || | |||| | | |||| | || || ||||| |
Sbjct 203783 TGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCAC 203842
Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905
||||| ||| ||||| || || | | || || ||||||| || | ||| ||
Sbjct 203843 CAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGT 203902
Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965
||||||| || ||| ||||||||| |||| ||| | ||||| ||||| ||||
Sbjct 203903 CCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGA 203962
Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAA 112023
| || || |||| ||||| |||| | | || |||||| | ||| || ||||
Sbjct 203963 ATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGGTTTCCAG 204020
Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
||| ||||| | || || ||| |||| ||||| ||||| | ||||| ||| ||
Sbjct 204021 GACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGG 204080
>seq96
Length=87723
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/209 (71%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||| ||||||||||| || || || | ||| || |||||| |||||
Sbjct 52272 GGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACC 52331
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776
||||| | || |||||||||| ||| | |||| ||| || | ||| |||||| |
Sbjct 52332 GGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCA-AAAGCACCGCTGAAGAAAA 52390
Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCA 122835
|||| ||||| ||||| |||| | ||| | ||||||| | || ||||| | | |
Sbjct 52391 TACCTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTG-GATTCTTTGTCCTGA 52449
Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTT 122864
| ||| || ||||| | ||||||||
Sbjct 52450 ATCCAACGGATAGCCCAATCTGCCTTCTT 52478
>seq9
Length=558614
Score = 86.0 bits (94), Expect = 8e-12
Identities = 294/449 (65%), Gaps = 22/449 (5%)
Strand=Plus/Plus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
||||||||| || || || | ||| || | |||||| ||||| | || || ||| | ||
Sbjct 365995 ATCAAAACGCCCGGGACGCATGAGAGCCTTATCAAGAATATCGGCTCGGTTGGTGCCGGC 366054
Query 11512 AATAACCACAATGCCAGTCTCAT---TGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568
| || |||| | |||| ||| || |||||||| || || || | |||||
Sbjct 366055 CAGCACGACAA---CTTGCTCACGGGTGTTGAATCCATCCATTTCTGTCAGAATCTGATT 366111
Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTG-----CT-T 11622
| || ||||| |||||| || | | || | | || ||| || |
Sbjct 366112 CAGCGTAGCTTCTCGCTCATCGTTGCCACCGAAGCCTCGTCCGCTTTCTTGACGAGCTCT 366171
Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682
|| | ||||| || ||||||||||| | || || ||| ||| | ||| | |
Sbjct 366172 ACCAATGGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGC 366231
Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740
||| ||||| || |||| | | ||| |||||||||||||| || ||||| | | |
Sbjct 366232 AAATAGATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGGAACC 366291
Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800
|| | | || | |||||| ||| |||||||| || ||||| || | || ||
Sbjct 366292 GCTTA-CGCT-AAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTT 366349
Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTC 11858
|| || |||||||| |||||||| | || || || || |||||||| || ||||
Sbjct 366350 TTGCCAGTACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTC 366409
Query 11859 -CAAAATATCTCTCGGGTTGCTTGAGAAA 11886
|||| | |||| || || ||||||||
Sbjct 366410 TCAAACT---TCTCAGGCTGTTTGAGAAA 366435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628011353448000
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