Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 304 2e-77 seq96 87.8 2e-12 seq9 86.0 8e-12 >seq5 Length=693879 Score = 304 bits (336), Expect = 2e-77 Identities = 1130/1740 (65%), Gaps = 47/1740 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || |||||||| || ||||||| || | ||||| |||| || |||| Sbjct 202363 TAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTG 202422 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGAAGCGCC 110486 ||| || ||| | |||| | ||| | | || |||| |||| ||||| | Sbjct 202423 CCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACT--GGTCGATGAAAGCAC 202480 Query 110487 CCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGCGATA 110544 | || | || ||||| | | ||| | | || | |||||||||||| || || Sbjct 202481 CACGGTCAGCAGCCATCTGCACGACGTGTCGTTGAGA--AATTTCCCAAACAGTTTTGTA 202538 Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604 |||| ||||| || | ||||| | | ||||||||| |||||||| | | | Sbjct 202539 GAGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAAT 202598 Query 110605 CATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTG 110664 || | | ||||||| | | ||||| || || || | ||| || || | || Sbjct 202599 GATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCA 202658 Query 110665 CTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTA 110724 |||||||| || |||||||| ||| | | |||| ||||| | ||||| Sbjct 202659 GGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTA 202718 Query 110725 TGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGC 110784 || || ||||| ||||| ||||| | || || | ||| || || || ||||| || || Sbjct 202719 AGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGC 202778 Query 110785 CATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC 110844 | || || ||| |||| || | ||||||||| | ||||| ||| || ||| || Sbjct 202779 GAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTC 202838 Query 110845 GTAGTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 || | || || ||||| | ||||||||||||||||||| | || | ||| ||| Sbjct 202839 CCAGAGGTCAGAA-GGCTTCACGT-CCCACATGTCAAACTGAAGAATGCCCTCGGAGGCG 202896 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTC 110961 ||||| ||||||||||| || | ||||| | | |||||||| |||| || Sbjct 202897 GGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAG-AGGCAGT 202955 Query 110962 CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGA 111021 |||| || || || ||||| ||||| || | || | ||| ||| ||| || Sbjct 202956 GAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGA 203015 Query 111022 ATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 111081 ||||||| ||| | || || | || |||||||| || || || | |||||| Sbjct 203016 CTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAAT 203075 Query 111082 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 111141 || | ||||||||| || || || || || ||||| || || ||||| Sbjct 203076 CGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAAT 203135 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 || || ||| || || ||| | || |||| || || || || | | || | Sbjct 203136 GATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 203195 Query 111202 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGG----GCGATTGATGCCAAATTGCAAA 111257 ||| ||| | | | | ||| || ||| || | || ||||| ||||||| Sbjct 203196 ---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAA 203251 Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAA 111317 |||| |||||| | | |||||| | |||||| || || | |||||| || | Sbjct 203252 CAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGA 203311 Query 111318 TCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGG 111377 | || ||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| | | Sbjct 203312 TTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAG 203371 Query 111378 GCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACA 111436 | | |||||||| ||||| | | || || | | ||| | | || | ||| | | Sbjct 203372 GATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-GGCACG---A 203427 Query 111437 ATGG-CGTTGGCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 |||| || | || | ||||| ||| |||||| ||||| || ||||||||||| Sbjct 203428 ATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCG 203487 Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACC 111552 || ||| | || || || || || || || || | |||| ||| | ||| Sbjct 203488 CCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTT 203546 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 111611 | ||| || |||||||||||||| || |||||||| || | || | ||| | | | Sbjct 203547 CTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGC 203606 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || || | ||||| | || || || ||| || ||||||||||| | | ||| |||| Sbjct 203607 ACGGA-CTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGT 203665 Query 111672 GCCATGGCT-CAAG---ATAG--ACTGCGATAGATCCCTTTCGACGCCCAGCTTGATTTA 111725 |||| |||| |||| || | | ||| || || ||| | | ||| | || | | Sbjct 203666 GCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTT--GTTG-CCACCCTGGTCGA 203722 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | || ||| ||| || || |||||||| ||||| | ||||| || || | Sbjct 203723 CATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGT 203782 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 | || || ||| || | |||| | | |||| | || || ||||| | Sbjct 203783 TGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCAC 203842 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 ||||| ||| ||||| || || | | || || ||||||| || | ||| || Sbjct 203843 CAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGT 203902 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 ||||||| || ||| ||||||||| |||| ||| | ||||| ||||| |||| Sbjct 203903 CCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGA 203962 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAA 112023 | || || |||| ||||| |||| | | || |||||| | ||| || |||| Sbjct 203963 ATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGGTTTCCAG 204020 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| ||||| | || || ||| |||| ||||| ||||| | ||||| ||| || Sbjct 204021 GACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGG 204080 >seq96 Length=87723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| || || || | ||| || |||||| ||||| Sbjct 52272 GGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACC 52331 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||| | || |||||||||| ||| | |||| ||| || | ||| |||||| | Sbjct 52332 GGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCA-AAAGCACCGCTGAAGAAAA 52390 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCA 122835 |||| ||||| ||||| |||| | ||| | ||||||| | || ||||| | | | Sbjct 52391 TACCTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTG-GATTCTTTGTCCTGA 52449 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTT 122864 | ||| || ||||| | |||||||| Sbjct 52450 ATCCAACGGATAGCCCAATCTGCCTTCTT 52478 >seq9 Length=558614 Score = 86.0 bits (94), Expect = 8e-12 Identities = 294/449 (65%), Gaps = 22/449 (5%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || || | ||| || | |||||| ||||| | || || ||| | || Sbjct 365995 ATCAAAACGCCCGGGACGCATGAGAGCCTTATCAAGAATATCGGCTCGGTTGGTGCCGGC 366054 Query 11512 AATAACCACAATGCCAGTCTCAT---TGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 | || |||| | |||| ||| || |||||||| || || || | ||||| Sbjct 366055 CAGCACGACAA---CTTGCTCACGGGTGTTGAATCCATCCATTTCTGTCAGAATCTGATT 366111 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTG-----CT-T 11622 | || ||||| |||||| || | | || | | || ||| || | Sbjct 366112 CAGCGTAGCTTCTCGCTCATCGTTGCCACCGAAGCCTCGTCCGCTTTCTTGACGAGCTCT 366171 Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 || | ||||| || ||||||||||| | || || ||| ||| | ||| | | Sbjct 366172 ACCAATGGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGC 366231 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740 ||| ||||| || |||| | | ||| |||||||||||||| || ||||| | | | Sbjct 366232 AAATAGATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGGAACC 366291 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 || | | || | |||||| ||| |||||||| || ||||| || | || || Sbjct 366292 GCTTA-CGCT-AAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTT 366349 Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTC 11858 || || |||||||| |||||||| | || || || || |||||||| || |||| Sbjct 366350 TTGCCAGTACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTC 366409 Query 11859 -CAAAATATCTCTCGGGTTGCTTGAGAAA 11886 |||| | |||| || || |||||||| Sbjct 366410 TCAAACT---TCTCAGGCTGTTTGAGAAA 366435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011353448000