Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 >seq5 Length=693879 Score = 250 bits (276), Expect = 3e-61 Identities = 1118/1751 (64%), Gaps = 65/1751 (4%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| ||||||||||| ||| | |||||| | | ||||| || | | ||| Sbjct 202362 GTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTT 202421 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | || ||| | |||| | ||| | | ||||| || |||||||| || Sbjct 202422 GCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACC 202481 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAG 118019 || || || ||||| | | || | || | || ||||||| ||||| ||||| Sbjct 202482 ACGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAG 202539 Query 118020 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACC 118079 || || || || | ||||| | |||||| || ||||| ||| || | | Sbjct 202540 AGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGA---ACCGTTCTCGGCA 202596 Query 118080 ATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 |||| | | ||||||| | | ||||| || || || | |||||| | || || Sbjct 202597 ATGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGC 202656 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 |||||||| || ||||| || ||| || | | || || |||| |||| Sbjct 202657 CAGGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTG 202716 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 || ||||| ||||||||||||||||| | || || | || || || || |||||||| Sbjct 202717 TAAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGG 202776 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAG 118316 || | || || ||| || | || | ||| | || | ||||| ||| | ||| Sbjct 202777 GCGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCAC 202836 Query 118317 TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 || || | | || | | | |||||| |||||||| || || || | ||| || Sbjct 202837 TCCCAGAGGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGAGGCG 202896 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 118433 || || |||||||| || || || || | ||| ||||||||| ||| || Sbjct 202897 GGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG---GCA 202953 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 118493 |||||| || || || || || ||||| || | || | | |||||| | Sbjct 202954 GTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGG 203013 Query 118494 GAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553 || ||||| | | || | || || | || |||||||| ||||| || | ||| Sbjct 203014 GACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCA 203073 Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 118613 || || || |||| ||| || ||||| || || ||||| || || ||| Sbjct 203074 ATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCA 203133 Query 118614 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 118673 || | || || || || || |||| |||| || || ||||| | | | || Sbjct 203134 ATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCG 203193 Query 118674 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAGATTACA 118729 | ||| ||| | | | | ||| ||| ||| || | || |||| || || Sbjct 203194 TA---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCA 203249 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 |||| | |||||| ||| |||||| | |||||||||||| | ||| || || Sbjct 203250 AACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCG 203309 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 || || ||||||||||| || || ||| |||| || ||||||||||| |||||| | Sbjct 203310 GATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAA 203369 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCA 118908 || | |||||||| || |||| || || || | | ||||| | || | |||| Sbjct 203370 AGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-----GGCA 203424 Query 118909 C-AGTGGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAAAC 118961 | | ||| | || || |||| | || ||| |||||| ||||| || |||||| Sbjct 203425 CGAATGG---TCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAAC 203481 Query 118962 TCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTG 119020 || || || | || | || || || || || | ||||| | |||| ||| | Sbjct 203482 TCCTCGCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATC 203540 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 ||| || ||| || ||||||||||| || || || ||||| || || ||| | ||| Sbjct 203541 ACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATC 203600 Query 119081 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 119140 ||| || ||||||| | || ||||| ||||| || | || || | | ||| Sbjct 203601 ACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATC 203660 Query 119141 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTG 119194 |||||||| || |||| ||| | || | | || | | || ||| |||| Sbjct 203661 GGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCC---AGGTCGCTTGTTGCCACCCTG 203717 Query 119195 GTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTG 119254 || ||||| || || ||| ||| || ||||||||||| ||||||| ||||| ||| Sbjct 203718 GTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGT 203777 Query 119255 GCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312 || || || || || || ||| | | |||| | | ||||| | || || Sbjct 203778 CCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCGCGAATGCGGTGGACATTCAAGCCG 203835 Query 119313 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 119372 ||||| || ||| ||| ||||| ||||| | |||| || | ||||| || ||| Sbjct 203836 ATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCG 203895 Query 119373 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCA 119432 || ||| |||| | ||| ||||||||| ||||| ||| ||||| ||| Sbjct 203896 ATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCA 203955 Query 119433 GCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA--TACCTTGGGACATCTTGTCGTAGG 119490 |||||||| || || |||| ||||| |||| | | || |||||| | ||||| Sbjct 203956 GCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGG 204013 Query 119491 TCTCCAAGAC---GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 | |||| ||| | | ||||| ||| | || |||| | ||| ||||||| || Sbjct 204014 TTTCCAGGACTCGCTCAATATTGTCTCCCCAG---ATCCCGACAGCGACACGCATAATCA 204070 Query 119548 TGTATTGGGGT 119558 ||| |||||| Sbjct 204071 TGTGCTGGGGT 204081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618414868942800