Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq5 208 9e-49
seq9 105 8e-18
seq96 96.9 4e-15
>seq5
Length=693879
Score = 208 bits (230), Expect = 9e-49
Identities = 899/1394 (64%), Gaps = 33/1394 (2%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278
|| ||| ||||| | ||||| || || |||| || |||||| |||| ||||
Sbjct 204080 CCCCAGCACATGATTATGCGTGTCGCTGTCGGGATC--TGGGGA-GACAATATTGAGCGA 204024
Query 104279 GTCTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCC 104336
||| |||| || ||| | |||||| || | | |||| ||||| |||| || |
Sbjct 204023 GTCCTGGAAACCTACCATCTCATGTCC--AGCAAACTCTTCACACACGCCTCACCCACAC 203966
Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396
| ||||| ||||| ||||| | || |||| ||||||||| ||| || ||||
Sbjct 203965 TATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGG 203906
Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456
||||| ||| | || ||||||| || || | | || || ||||| ||| ||
Sbjct 203905 AGGACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGG 203846
Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516
|||| ||||| || || | |||| | | |||| | || ||| || |
Sbjct 203845 CTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCA 203786
Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576
| || || || ||||| | ||||| |||||||| || || ||| ||| || | |
Sbjct 203785 CCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGAT 203726
Query 104577 ATGTAAATCAAGCTGGGCGTCGAAAGGGATCTATCGCAGT--CTAT---CTTG-AGCCAT 104630
|||| | || | ||| | | ||| || || ||| | | || |||| |||| |
Sbjct 203725 ATGTCGACCAGGGTGG-CAAC--AAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTT 203669
Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690
||||||| ||| | | ||||||||||| ||||| || || || | || || | |
Sbjct 203668 GGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCC 203609
Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749
| ||| || ||| | ||| ||||| |||||||| ||||| ||||||||| | || |||
Sbjct 203608 G-TGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAG 203550
Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGT 104808
||| || ||||| |||| | || || || || || || || || | || |
Sbjct 203549 AAGAACGGTGATTGGACTCTGATGTGCCCCAACGAATGCCCC-GGCCTGGCTGACTGCTA 203491
Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868
|| ||||||||||| || || || |||||| ||| || || || ||||||
Sbjct 203490 CGGCGAGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAGGGTCGTGCGAC 203431
Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927
| | || | || | | ||| | | || || || | || || ||||| |||| |
Sbjct 203430 CATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATC 203372
Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987
| | |||||| ||||| || ||||| ||| ||||| || || ||||| ||||| |
Sbjct 203371 CTTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAA 203312
Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047
|| || ||||| || || || ||||| | || | | | | |||||| ||||
Sbjct 203311 TCCGCAGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTG 203252
Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 105106
| || ||| | || || | ||||| || | || || | | | | ||| |
Sbjct 203251 TTTGCAACTTGGCCTCTCTGGCTCTGCCTGCCTTCGTAGA-CTACAACGAGGGACGCTAC 203193
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|| | | || |||||||| || || | || ||||| |||||| | |||
Sbjct 203192 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATT 203133
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || |||||||| || || || || || ||| ||||||| || |||
Sbjct 203132 GATGTCAACCACTACCCCGTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATT 203073
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285
||| | || || ||||||||||| || | ||| || | ||| ||| ||||||| ||
Sbjct 203072 GGTGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCTTGCCTTG-CGCATGCCATTTGAGTC 203014
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
| || || || |||| || |||||||||||||| || || || || ||
Sbjct 203013 CCCTGAGGCCCGTGAGCTCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCAC 202954
Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405
|| | || ||||| ||| | || || || ||||||||||| ||||| ||
Sbjct 202953 TGCCTCTGTCGAATTGGCCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGC 202894
Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGAC 105463
|| | || | ||||| ||||| ||||||| | |||| | | || | || ||
Sbjct 202893 CTCCGAGGGCATTCTTCAGTTTGACATGTGGG-ACGTGA-AGCCTTCTGACCTCTGGGAG 202836
Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523
||| | ||| ||||| | ||||||||| | || |||| ||| || || | ||
Sbjct 202835 TGGAATAGTCTGAAGGAGCAGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCC 202776
Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583
|| ||||| || || || ||| | || || | ||||| ||||| ||||| || || |||
Sbjct 202775 CCCATGCCTACGGCTTCTACCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTAC 202716
Query 105584 ACGACGAACATCTA 105597
||| | ||||| ||
Sbjct 202715 ACGTCCAACATTTA 202702
>seq9
Length=558614
Score = 105 bits (116), Expect = 8e-18
Identities = 186/267 (70%), Gaps = 18/267 (7%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762
|||||| || ||||||||||| | |||||| ||| ||| | |||| | | |||| ||
Sbjct 366178 GGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGCAAATAG 366237
Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC- 9821
||| || || || | || |||||||||||||| || ||||| | ||||||
Sbjct 366238 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATT------CGGAACC 366291
Query 9822 -ATT----GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876
|| | ||| || ||| ||||||||| || ||||| || | ||| || ||
Sbjct 366292 GCTTACGCTAAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTTTT 366351
Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-C 9933
|| |||||||| |||||||||| || || || ||||||||||| || |||| |
Sbjct 366352 GCCAGTACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTCTC 366411
Query 9934 AAAGTATCTCTCAGGTTGCTTAAGAAA 9960
||| | ||||||| || || |||||
Sbjct 366412 AAACT---TCTCAGGCTGTTTGAGAAA 366435
>seq96
Length=87723
Score = 96.9 bits (106), Expect = 4e-15
Identities = 162/229 (71%), Gaps = 8/229 (3%)
Strand=Plus/Minus
Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAG- 94788
|| |||||| || |||| ||||| || ||||||||||| ||| || | ||||||
Sbjct 52497 AATAGTTCCTTGCATTCGCAAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGA 52438
Query 94789 -TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847
|| | ||| || |||| | | || ||||| || || ||||| ||||||
Sbjct 52437 ATCCAG---CTTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAG 52381
Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906
||| | || ||| |||| | ||||| |||||||| || | ||||| |||||| ||
Sbjct 52380 CGGTGCTTT-TGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCT 52322
Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||||| | ||||| ||||| ||||| || ||| ||| |||||
Sbjct 52321 TCTCCAACGAATTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGC 52273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583241625301200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |