Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq11 178 4e-39 seq20 158 4e-33 seq3 100 9e-16 seq4 95.1 4e-14 seq37 93.3 1e-13 seq13 87.8 5e-12 >seq11 Length=468793 Score = 178 bits (196), Expect = 4e-39 Identities = 230/318 (72%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 |||||||| | ||||| ||||| || ||||| || | |||||| || || || || Sbjct 68512 GATGCTGTAGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 68453 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 ||||| | |||||| || | || | | | || |||||||| |||||||||||||| Sbjct 68452 GCTGGTACCATTGCCGGAATCAACATCTTGCGTATCATTAATGAGCCCACTGCTGCAGCT 68393 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 ||||| || || ||||| || | | ||| || ||| | || || ||||| | Sbjct 68392 ATTGCGTACGGCCTTGACAAGAAGGCTGAAGGCGAGCGCAATGTGCTGATCTTTGACCTT 68333 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || || ||||| |||||||| || || | || ||||||| ||||| |||||||| || Sbjct 68332 GGCGGAGGTACCTTTGATGTGTCTCTCTTGACTATTGAAGACGGAATCTTTGAAGTGAAG 68273 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906 || ||||||||||| || || | ||||| || |||||||||||||| ||||| || Sbjct 68272 GCCACTGCTGGTGACACCCACTTGGGTGGTGAGGATTTTGATAATCGCCTCGTAAACCAC 68213 Query 349907 TTTGTTAAAGAATTTAAG 349924 ||||| | ||| || ||| Sbjct 68212 TTTGTCACAGACTTCAAG 68195 Score = 143 bits (158), Expect = 8e-29 Identities = 449/689 (65%), Gaps = 15/689 (2%) Strand=Plus/Minus Query 349961 GCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCT----AC 350016 || |||||||| || | || || |||||||| || |||||| || | || || || Sbjct 68098 GCTATGCGTCGTCTTCGCACGGCCTGTGAACGAGCGAAGCGTGCCCTCTCCGCTCAACAC 68039 Query 350017 TACCCAAACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTA 350075 || ||||| | ||| |||||||| ||| | || |||| || | || || | | Sbjct 68038 AACACAAACGT----TGAGATTGATTCG-TTGTTCGAGGGCATTGACTACTCCGCACCGA 67984 Query 350076 TTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTG 350135 |||| ||||| || || |||||| |||| ||||| || || | || | | |||| Sbjct 67983 TTACCCGTGCCCGTTTCGAAGAACTATGCCAAGATCTGTTCCGATCTACTCTCCAGCCTG 67924 Query 350136 TGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAG 350195 |||| || | | || || ||| | ||| ||| | | || | ||| ||| Sbjct 67923 TGGATCGCGTCCTCACTGACGCCAAACTCGACAAGTCTCAAGTCCACGACATTGTTCTAG 67864 Query 350196 TTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTT-ACTATCTGAGTTTTTTAATGGC 350254 | || || ||||| || ||||| ||||| | | | || | || | || |||||| Sbjct 67863 TGGGAGGCTCTACTCGGATTCCTCGTGTTCAGAATCTCATTAGC-GACTACTTCAATGGC 67805 Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314 ||| || | | || || || || || ||||| || |||| |||||||| ||| Sbjct 67804 AAAACGCCCAGCAAAAGCATCAACCCTGACGAGGCTGTAGCCAATGGCGCTGCTGTACAG 67745 Query 350315 GCATCTATTTTATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGAT 350371 || |||| || |||||| ||| | || || || | || | || || || || Sbjct 67744 GCTGCTATCTTGTCTGGAGATACTACATCCAAGTCAACAAACGAAATCTTGCTTCTTGAC 67685 Query 350372 GTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCT 350431 || | || || || || || | |||||| |||||| | ||||| | |||||| Sbjct 67684 GTTGCACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCT 67625 Query 350432 AGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG 350491 |||| | || | || ||||| ||| | | || ||||| || ||| ||||||| ||| Sbjct 67624 CGAAACACAACCATTCCCACAAAGAAGACTGAGACGTTTTCGACGTTTTCAGATAACCAG 67565 Query 350492 CCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAA 350551 || | || |||||||| | || ||||| || |||||||| || || || Sbjct 67564 CCTGGCGTCCTCATTCAAGTGTACGAGGGTGAGCGCCAGCGCACTAAGGACAACAACTTG 67505 Query 350552 CTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAA 350611 | || |||| || | || ||||| || ||| | |||||||||||||||||| Sbjct 67504 ATGGGCAAATTCGAACTTACTGGCATTCCTCCCGCGCCCCGCGGAGTTCCTCAGATTGAA 67445 Query 350612 GTCTCTTTCGATATTGATTCAAATGGTAT 350640 || | || ||| ||||| | |||||||| Sbjct 67444 GTTACATTTGATCTTGATGCCAATGGTAT 67416 Score = 104 bits (114), Expect = 7e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 |||||||||| |||||||| || || || || |||||||| || || |||||||| |||| Sbjct 68230 TATCAAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTC 68289 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||||||||||| | || | || |||||||| ||||| || || | ||||| Sbjct 68290 CGTCTTCAATAGTCAAGAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAA 68341 Score = 84.2 bits (92), Expect = 7e-11 Identities = 321/495 (65%), Gaps = 17/495 (3%) Strand=Plus/Plus Query 182811 TTTTCAGCATCCATTGTCATTCTTTCTATTTCATCTTTAGAAAGATGACCTGCATCATTT 182870 |||||||| || | ||| | || || || || || || ||| |||| ||||| Sbjct 67299 TTTTCAGCTTCAGCTACCATGCGCTCGATCTCTTCCTTGGACAGACGACCCTTGTCATTG 67358 Query 182871 GTAATTACTACATTACTAGTTACT--CCAGTTGATTTTTCAAGTGCGCTAACATTTAAAA 182928 || || || | || | | ||| ||||| ||| || || ||| || || | | Sbjct 67359 GTGATGACAATCTTGTTGG--ACTTGCCAGTACCTTTCTCCAGAGCGGACACGTTCATGA 67416 Query 182929 TACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGTG 182988 ||||||| | |||| |||||||| ||||||||||| ||||| || || ||| || | Sbjct 67417 TACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGAG 67476 Query 182989 GAATTCCAGTTAAAGT--AAATTCACCTAATTTATTATTATCTTTAGTTCTTGCT--CTC 183044 |||| ||||| |||| |||| || | || || || ||||| | ||| | | Sbjct 67477 GAATGCCAGT--AAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGC--GCTGGCGC 67532 Query 183045 TCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACT 183104 || || || || |||||||| || | ||||| ||||| | | || ||||| Sbjct 67533 TCACCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTC 67592 Query 183105 TGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAA-CAATTACAGTCATTACTTCTCT 183163 | | || || | ||||| |||| ||||| |||| ||| | ||||| | | | Sbjct 67593 TCAGTCTTCTTTGTGGGAATGGTTGTGTTTCGAGGAATCAACT-TTGTCATCATACCACC 67651 Query 183164 GGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTT 183223 |||||||| | |||| ||| | ||||| || || || | || | || |||| Sbjct 67652 AGCAGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGA 67711 Query 183224 ATCTGATTTAATAT---CACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGC 183280 | ||| || ||| || || || ||||| || ||||| || |||| || ||||| Sbjct 67712 CTTGGATGTAGTATCTCCAGACAAGATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGC 67771 Query 183281 TTCATCTGGGTTAAT 183295 || || ||||| || Sbjct 67772 CTCGTCAGGGTTGAT 67786 >seq20 Length=366416 Score = 158 bits (174), Expect = 4e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || |||||||| ||||| || || || || || || | Sbjct 156659 TTTGCATGCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGT 156718 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || ||||| || ||||||||||| || ||||| || || | Sbjct 156719 AGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGT 156778 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||||||||| || || |||||||| || | || ||||| || || | ||||||| Sbjct 156779 CAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATG 156838 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| ||||| || ||||| || ||||||||||| Sbjct 156839 ACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | |||||||||||||| || ||||| || || || |||||||| Sbjct 156373 CATACCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATC 156432 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || ||||| | ||||| ||||| || || ||||| ||||| ||||| Sbjct 156433 GGCGAGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 156492 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || || ||||| || | ||| ||||| || || | |||||| | ||| Sbjct 156493 AGGAATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTC 156552 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || || || |||| ||||||||||| | || || |||| Sbjct 156553 CACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACAA 156593 >seq3 Length=769506 Score = 100 bits (110), Expect = 9e-16 Identities = 177/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 378220 AGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACA 378279 |||||||| ||||| ||||||| ||| || ||||||||||| || | ||| | Sbjct 495053 AGTCGTCGCTGGATATATCCAGTTTCGGCAGTCTTGACTGCAGTATCGATGAGACCTTCT 495112 Query 378280 CGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTC 378339 |||||| |||| ||||||||||| || || | || || || |||| | | || | Sbjct 495113 CGACCAGCCATGGCATGGAAGAAAAACTCGGATGGCGTGAGACCACGGAGGTACGAGTTT 495172 Query 378340 TCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGA 378399 |||| ||| || | || | || |||| ||| | ||||| |||| |||| || || Sbjct 495173 TCAACAAAGCCACGAGCTTCGGGGGAATAATCGTCCTTTGTGAAATGCGGTAGGGTTCGG 495232 Query 378400 TTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAA 378456 | | || ||| | ||||| ||||| || || ||| |||| |||| |||| |||| Sbjct 495233 TATTTGAAACCAAAGGGAATACGTTTCCCTTCGACAATCTGCTGACCGACAAGAGCAG-- 495290 Query 378457 ACCATTTGAGCAATATT 378473 ||| |||| ||| || Sbjct 495291 -TCATCTGAGAAATGTT 495306 >seq4 Length=697727 Score = 95.1 bits (104), Expect = 4e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || ||||| || || | | ||||| ||||| ||||| || || ||||||||||| Sbjct 592302 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 592243 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || ||||| ||||| ||||| || || |||||||| || || | ||| ||||| || Sbjct 592242 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 592183 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | ||||| | || || || || || | ||||| || || | || || || ||| Sbjct 592182 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAA 592123 >seq37 Length=257599 Score = 93.3 bits (102), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || |||||||| || ||| || || | || || || |||| | || || ||| Sbjct 182547 GCTACCAAAGATGCCGGTGTCATCGCCGGTCTCAACGTCCTCCGAATTGTGAACGAGCCC 182606 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAA-TGAGTGACCAAGaaaaaaaTATTCT 349773 || || || || || || || || || || || | |||| || || | |||| || Sbjct 182607 ACCGCCGCCGCCATCGCTTACGGTCTGGACAAGACTGAGGGAG--AGCGACAAATCATCG 182664 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833 | || |||| | |||||||||||||| ||||| || || || | |||| |||| | Sbjct 182665 T--TTATGATCTTGGTGGTGGTACTTTCGATGTCTCCCTCCTTTCCATTGATCAGGGTGT 182722 Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||| || || || ||||||||||| || ||||| ||||| |||||||| || Sbjct 182723 TTTCGAGGTCCTGGCTACTGCTGGTGACACTCATCTGGGTGGTGAAGATTTCGA 182776 >seq13 Length=451911 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||| || || || || || || | Sbjct 17274 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGC 17333 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 17334 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGG 17393 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| ||||| | || || || || || | || || | || || Sbjct 17394 GATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 17453 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || ||||||||||| Sbjct 17454 CTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 17501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515203340661890