Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 381 6e-101 >seq5 Length=693879 Score = 381 bits (422), Expect = 6e-101 Identities = 950/1431 (66%), Gaps = 60/1431 (4%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||| || || |||||| ||||| |||| ||||||| |||||| |||||||| ||| Sbjct 202674 GAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTC 202733 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||||| || | ||||| | ||| || || || |||||||| |||| ||| || || || Sbjct 202734 ATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAGTT 202793 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGT------CCCAAAATTCATTCGC 78680 |||| |||||| |||||||| |||| || | | |||| | ||| | Sbjct 202794 GCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAGAAGG 202853 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 | | |||||||||| ||||| || |||||||| || || || |||| || || Sbjct 202854 CTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGAGGCGGGAGAGCCCTCAAAGGT 202913 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACAC 78800 ||||| ||| | ||||||||| | |||| || | ||||| || ||||| | Sbjct 202914 AGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAGGCAGTGAGGGCAGCATGGTAGAT 202973 Query 78801 AGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGA- 78859 | ||| || || |||||||||||| || |||| | || || | | || | Sbjct 202974 GGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGACTCAAATGGCATGCGCAA 203033 Query 78860 -GCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG 78918 ||| | ||| | ||||| || ||||||||||| | | | ||||| ||||| |||||| Sbjct 203034 GGCA--AGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAATCGGCCGGTGTCGCATG 203091 Query 78919 TTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978 ||||| || |||||| ||| | ||||| ||| ||| |||| | ||||||||| Sbjct 203092 TTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATGATTCTGTTCAGGTTG 203151 Query 78979 CGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATG 79038 || |||||| | || ||||||| | || ||| || | | ||| | | || Sbjct 203152 CGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG---TCCCTCGTTG 203208 Query 79039 AAAGTC------GGTAGGCACAGC----GATGCCAGGTTGCACACGGCCGTCTCGTCCGG 79088 | ||| || ||||| ||| || |||| |||||| || || ||| || || Sbjct 203209 TA-GTCTACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGACCTCATCAGG 203267 Query 79089 GCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTT 79148 | ||| ||||| ||||| ||||| | || || ||| || || | |||||| Sbjct 203268 GGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTT 203327 Query 79149 CTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAAC 79208 ||||||||||||| ||| ||||| ||||||||| |||| | || | || ||||| Sbjct 203328 CTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCTGT 203387 Query 79209 CTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACC 79268 ||| || || | | || ||||| | | |||| || | | | | || |||| Sbjct 203388 CTGGGCCTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAA-----TGGTCGCAC-GACC 203441 Query 79269 CTGTGCG---ACG----TACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGG 79321 || ||| ||| ||| | || | | | || |||| || ||| || | Sbjct 203442 CT-TGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAG 203500 Query 79322 GCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCT 79381 |||||| ||||| |||| ||||||||||| ||| || ||| |||||| || || Sbjct 203501 CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCT 203560 Query 79382 CCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGT 79441 |||||| || || || ||||| || || ||| | || || ||| | || || | Sbjct 203561 TCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCT 203620 Query 79442 CGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501 ||| || ||| |||| || || || || | | ||||||||||| ||||||| | Sbjct 203621 TGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGT 203680 Query 79502 AGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGT 79561 | ||||| || | || |||||| ||| ||||||| ||| || | ||||||||||| Sbjct 203681 AAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGT 203740 Query 79562 TGAAAACTCGGAGCATGGGCACGATGCCGTCGG-CGACGCCGTTCGTCCCGTTGATTCGT 79620 ||||||| || |||||||| | || || | || || | ||||| || ||| || Sbjct 203741 TGAAAACACGAAGCATGGGAATGACACCATTGGACGTC-CCGTTGGTGCCGGCAATGTAG 203799 Query 79621 GTACCGCTCGCCCGAATGTTCGAGCAGTGG--ATT----CCGATGCCCCCGGACCACTTG 79674 | || | || ||||| || |||| ||| ||||| || || | | |||| Sbjct 203800 GAGCCAGTGGCGCGAAT------GCGGTGGACATTCAAGCCGATACCACCAGCCATCTTG 203853 Query 79675 GAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATA 79734 ||||| ||||| ||||||||| || |||||||||||||| ||| |||||||| Sbjct 203854 GAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATG 203913 Query 79735 GCGACCAGGAAGCAGCTCGACATCTG----TGGGTTGTTCGTACCGGCGTTGAAGAGGGT 79790 |||| |||||||| ||||| ||| || | | || || |||||||| || || Sbjct 203914 TCGACGAGGAAGCAAGACGACAGCTGACATTGAGGT----GTGCCAGCGTTGAATAGTGT 203969 Query 79791 CGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGG 79850 || | ||||| ||||||| || | ||| |||| ||| || ||| ||| ||| Sbjct 203970 GGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTC 204029 Query 79851 GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 | | ||| || ||| ||||| ||||| ||||| | | || |||||| Sbjct 204030 AATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGG 204080 Score = 334 bits (370), Expect = 8e-87 Identities = 922/1403 (66%), Gaps = 34/1403 (2%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| ||||| ||||| ||| || ||| | | |||||||| || || ||| | Sbjct 204065 ATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTCCTGGAAACCTACCAT 204006 Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 || ||| |||| || ||||||| ||||| | || || || |||||||| || || Sbjct 204005 CTCATGT-CCAGCAAACTCTTCACACACGCCTCACCCACACTATTCAACGCTGGCACACC 203947 Query 19237 CAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCAT 19296 | ||| ||||| || ||||| || | |||||||| |||||||| |||||||| Sbjct 203946 TCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCAT 203887 Query 19297 CTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG---GA- 19352 ||| || ||||||||| ||||| ||||||||| | | || |||||||| || Sbjct 203886 CTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA 203827 Query 19353 --TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 ||||| || || || | | ||| | || || || ||||| | Sbjct 203826 TGTCCACCGC------ATTCGCGCCACTGGCTCCTACATTGCCGGCACCAACGGGACGTC 203773 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 | | ||| || | || ||||| || || ||||||||||||||||| || ||| ||||||| Sbjct 203772 CAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGG 203713 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 ||| ||| || ||| | || ||||| ||| | ||||| |||||||| || || | Sbjct 203712 TGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTT 203653 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590 || ||||| || |||| ||| || || | || || | || ||| || | || Sbjct 203652 TGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCGTGCTCGTGATTTATT 203593 Query 19591 CACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCA 19650 | || | |||||||| || || |||||| || || |||||| ||| || ||| Sbjct 203592 CCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAACGGTGATTGGAC 203533 Query 19651 CCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGA 19710 ||||||||||| |||||||||| ||||| | ||| ||||||||||| ||| | | Sbjct 203532 TCTGATGTGCCCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGC 203473 Query 19711 GTTGTACCGGACTTACGTAGC-CCAGGGC-CGGTTCAAGAAGGTGGTCCGGGCCCGGGAC 19768 | || | || | ||| ||||| || || | | | || |||| | | Sbjct 203472 TCTCTATGAAAAGTATG-AGCGTGAGGGCAAGGGTCGTG-CGACCATTCGTGCCCAGAAG 203415 Query 19769 GTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAG 19828 ||||| || | |||| | |||| ||||| || | || | |||| ||||||| Sbjct 203414 CTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTCATGCTCTACAAG 203355 Query 19829 GACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTG 19888 || ||| ||| ||| || ||||||||| | || | ||| |||||||| Sbjct 203354 GATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGCAGCTCCAACCTT 203295 Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 || || ||||| | ||| || || || ||| || || || || |||| || Sbjct 203294 TGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGCAACTTGGCCTCT 203235 Query 19949 CTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACTTTGCCAAATTGTAC 20002 ||| ||||| | ||||| ||| | || |||||| || | || Sbjct 203234 CTGGCTCTGCCTGCCTTCGTAGACTACAACGAGGGACGCTACGACTTCCAGAAGCTCCAC 203175 Query 20003 GAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCG 20062 ||||| |||| |||||| || || ||||| | |||| ||| ||| ||||| Sbjct 203174 GAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATTGATGTCAACCACTACCCC 203115 Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122 | ||| ||| || || || ||||| ||||||||||| | | ||||||||||| Sbjct 203114 GTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATTGGTGTTGGCGTCCAGGGT 203055 Query 20123 CTGGCCGACGTTTTCATGATGC--TCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGC 20180 || ||||||| |||| | ||| | || | |||| || || |||| || |||| Sbjct 203054 CTCGCCGACGCTTTCCT--TGCCTTGCGCATGCCATTTGAGTCCCCTGAGGCCCGTGAGC 202997 Query 20181 TCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCG 20240 |||||||| || || ||| || | ||||| || |||||| | || |||| | | Sbjct 202996 TCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCACTGCCTCTGTCGAATTGG 202937 Query 20241 CCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCC 20300 |||| ||| | || || ||| || || |||| || ||||| |||||||| || || | Sbjct 202936 CCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGCCTCCGAGGGCATTCTTC 202877 Query 20301 AGCCGGACATGTGGGGCGTCA------CTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTG 20354 || |||||||||| ||| | |||| | |||| || |||| Sbjct 202876 AGTTTGACATGTGGGACGTGAAGCCTTCTGACCTCTGGGAGTGGAATAGTCTGAAGGAGC 202817 Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 |||||||| || || |||||||||| |||| |||| |||||||| || || || | Sbjct 202816 AGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCCCCCATGCCTACGGCTTCTA 202757 Query 20415 CCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGC 20474 || | ||||| | || ||||| ||| |||||||| |||||| ||||||| ||| | Sbjct 202756 CCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTACACGTCCAACATTTACCAAC 202697 Query 20475 GTCGTACACTGGCCGGTGAGTTC 20497 | ||| ||||| ||||| ||| Sbjct 202696 GCCGTGTCCTGGCAGGTGAATTC 202674 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || ||||| |||||||||||||||||||| ||| ||||| ||| | |||||| Sbjct 202354 GTGCGCAAGTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAA 202413 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | | || | || |||| ||||| || |||||||||||||||||| Sbjct 202414 GTGATCTTGCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATG 202473 Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332 | ||||| ||||| || ||||| Sbjct 202474 AAAGCACCACGGTCAGCAGCCAT 202496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 20672 ATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAG 20731 ||||| || || || || || | |||||||||||||||||| || || | |||| || Sbjct 202496 ATGGCTGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCACATGAAG 202437 Query 20732 AATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAG 20791 |||| | ||| ||| | | |||||||| | ||||||| | ||| |||||| Sbjct 202436 GATCCCACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAG 202377 Query 20792 ACGGGCATGTACTATCTGCGGACCCGAGC 20820 |||||||||||||| |||| || | ||| Sbjct 202376 ACGGGCATGTACTACTTGCGCACGCAAGC 202348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548506767247200