Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 381 6e-101
>seq5
Length=693879
Score = 381 bits (422), Expect = 6e-101
Identities = 950/1431 (66%), Gaps = 60/1431 (4%)
Strand=Plus/Plus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
||| || || |||||| ||||| |||| ||||||| |||||| |||||||| |||
Sbjct 202674 GAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTC 202733
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626
||||| || | ||||| | ||| || || || |||||||| |||| ||| || || ||
Sbjct 202734 ATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAGTT 202793
Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGT------CCCAAAATTCATTCGC 78680
|||| |||||| |||||||| |||| || | | |||| | ||| |
Sbjct 202794 GCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAGAAGG 202853
Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740
| | |||||||||| ||||| || |||||||| || || || |||| || ||
Sbjct 202854 CTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGAGGCGGGAGAGCCCTCAAAGGT 202913
Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACAC 78800
||||| ||| | ||||||||| | |||| || | ||||| || ||||| |
Sbjct 202914 AGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAGGCAGTGAGGGCAGCATGGTAGAT 202973
Query 78801 AGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGA- 78859
| ||| || || |||||||||||| || |||| | || || | | || |
Sbjct 202974 GGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGACTCAAATGGCATGCGCAA 203033
Query 78860 -GCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG 78918
||| | ||| | ||||| || ||||||||||| | | | ||||| ||||| ||||||
Sbjct 203034 GGCA--AGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAATCGGCCGGTGTCGCATG 203091
Query 78919 TTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978
||||| || |||||| ||| | ||||| ||| ||| |||| | |||||||||
Sbjct 203092 TTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATGATTCTGTTCAGGTTG 203151
Query 78979 CGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATG 79038
|| |||||| | || ||||||| | || ||| || | | ||| | | ||
Sbjct 203152 CGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG---TCCCTCGTTG 203208
Query 79039 AAAGTC------GGTAGGCACAGC----GATGCCAGGTTGCACACGGCCGTCTCGTCCGG 79088
| ||| || ||||| ||| || |||| |||||| || || ||| || ||
Sbjct 203209 TA-GTCTACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGACCTCATCAGG 203267
Query 79089 GCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTT 79148
| ||| ||||| ||||| ||||| | || || ||| || || | ||||||
Sbjct 203268 GGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTT 203327
Query 79149 CTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAAC 79208
||||||||||||| ||| ||||| ||||||||| |||| | || | || |||||
Sbjct 203328 CTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCTGT 203387
Query 79209 CTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACC 79268
||| || || | | || ||||| | | |||| || | | | | || ||||
Sbjct 203388 CTGGGCCTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAA-----TGGTCGCAC-GACC 203441
Query 79269 CTGTGCG---ACG----TACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGG 79321
|| ||| ||| ||| | || | | | || |||| || ||| || |
Sbjct 203442 CT-TGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAG 203500
Query 79322 GCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCT 79381
|||||| ||||| |||| ||||||||||| ||| || ||| |||||| || ||
Sbjct 203501 CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCT 203560
Query 79382 CCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGT 79441
|||||| || || || ||||| || || ||| | || || ||| | || || |
Sbjct 203561 TCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCT 203620
Query 79442 CGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501
||| || ||| |||| || || || || | | ||||||||||| ||||||| |
Sbjct 203621 TGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGT 203680
Query 79502 AGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGT 79561
| ||||| || | || |||||| ||| ||||||| ||| || | |||||||||||
Sbjct 203681 AAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGT 203740
Query 79562 TGAAAACTCGGAGCATGGGCACGATGCCGTCGG-CGACGCCGTTCGTCCCGTTGATTCGT 79620
||||||| || |||||||| | || || | || || | ||||| || ||| ||
Sbjct 203741 TGAAAACACGAAGCATGGGAATGACACCATTGGACGTC-CCGTTGGTGCCGGCAATGTAG 203799
Query 79621 GTACCGCTCGCCCGAATGTTCGAGCAGTGG--ATT----CCGATGCCCCCGGACCACTTG 79674
| || | || ||||| || |||| ||| ||||| || || | | ||||
Sbjct 203800 GAGCCAGTGGCGCGAAT------GCGGTGGACATTCAAGCCGATACCACCAGCCATCTTG 203853
Query 79675 GAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATA 79734
||||| ||||| ||||||||| || |||||||||||||| ||| ||||||||
Sbjct 203854 GAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATG 203913
Query 79735 GCGACCAGGAAGCAGCTCGACATCTG----TGGGTTGTTCGTACCGGCGTTGAAGAGGGT 79790
|||| |||||||| ||||| ||| || | | || || |||||||| || ||
Sbjct 203914 TCGACGAGGAAGCAAGACGACAGCTGACATTGAGGT----GTGCCAGCGTTGAATAGTGT 203969
Query 79791 CGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGG 79850
|| | ||||| ||||||| || | ||| |||| ||| || ||| ||| |||
Sbjct 203970 GGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTC 204029
Query 79851 GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901
| | ||| || ||| ||||| ||||| ||||| | | || ||||||
Sbjct 204030 AATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGG 204080
Score = 334 bits (370), Expect = 8e-87
Identities = 922/1403 (66%), Gaps = 34/1403 (2%)
Strand=Plus/Minus
Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177
||||| ||||| ||||| ||| || ||| | | |||||||| || || ||| |
Sbjct 204065 ATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTCCTGGAAACCTACCAT 204006
Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236
|| ||| |||| || ||||||| ||||| | || || || |||||||| || ||
Sbjct 204005 CTCATGT-CCAGCAAACTCTTCACACACGCCTCACCCACACTATTCAACGCTGGCACACC 203947
Query 19237 CAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCAT 19296
| ||| ||||| || ||||| || | |||||||| |||||||| ||||||||
Sbjct 203946 TCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCAT 203887
Query 19297 CTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG---GA- 19352
||| || ||||||||| ||||| ||||||||| | | || |||||||| ||
Sbjct 203886 CTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA 203827
Query 19353 --TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410
||||| || || || | | ||| | || || || ||||| |
Sbjct 203826 TGTCCACCGC------ATTCGCGCCACTGGCTCCTACATTGCCGGCACCAACGGGACGTC 203773
Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470
| | ||| || | || ||||| || || ||||||||||||||||| || ||| |||||||
Sbjct 203772 CAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGG 203713
Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530
||| ||| || ||| | || ||||| ||| | ||||| |||||||| || || |
Sbjct 203712 TGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTT 203653
Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590
|| ||||| || |||| ||| || || | || || | || ||| || | ||
Sbjct 203652 TGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCGTGCTCGTGATTTATT 203593
Query 19591 CACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCA 19650
| || | |||||||| || || |||||| || || |||||| ||| || |||
Sbjct 203592 CCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAACGGTGATTGGAC 203533
Query 19651 CCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGA 19710
||||||||||| |||||||||| ||||| | ||| ||||||||||| ||| | |
Sbjct 203532 TCTGATGTGCCCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGC 203473
Query 19711 GTTGTACCGGACTTACGTAGC-CCAGGGC-CGGTTCAAGAAGGTGGTCCGGGCCCGGGAC 19768
| || | || | ||| ||||| || || | | | || |||| | |
Sbjct 203472 TCTCTATGAAAAGTATG-AGCGTGAGGGCAAGGGTCGTG-CGACCATTCGTGCCCAGAAG 203415
Query 19769 GTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAG 19828
||||| || | |||| | |||| ||||| || | || | |||| |||||||
Sbjct 203414 CTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTCATGCTCTACAAG 203355
Query 19829 GACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTG 19888
|| ||| ||| ||| || ||||||||| | || | ||| ||||||||
Sbjct 203354 GATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGCAGCTCCAACCTT 203295
Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948
|| || ||||| | ||| || || || ||| || || || || |||| ||
Sbjct 203294 TGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGCAACTTGGCCTCT 203235
Query 19949 CTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACTTTGCCAAATTGTAC 20002
||| ||||| | ||||| ||| | || |||||| || | ||
Sbjct 203234 CTGGCTCTGCCTGCCTTCGTAGACTACAACGAGGGACGCTACGACTTCCAGAAGCTCCAC 203175
Query 20003 GAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCG 20062
||||| |||| |||||| || || ||||| | |||| ||| ||| |||||
Sbjct 203174 GAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATTGATGTCAACCACTACCCC 203115
Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122
| ||| ||| || || || ||||| ||||||||||| | | |||||||||||
Sbjct 203114 GTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATTGGTGTTGGCGTCCAGGGT 203055
Query 20123 CTGGCCGACGTTTTCATGATGC--TCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGC 20180
|| ||||||| |||| | ||| | || | |||| || || |||| || ||||
Sbjct 203054 CTCGCCGACGCTTTCCT--TGCCTTGCGCATGCCATTTGAGTCCCCTGAGGCCCGTGAGC 202997
Query 20181 TCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCG 20240
|||||||| || || ||| || | ||||| || |||||| | || |||| | |
Sbjct 202996 TCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCACTGCCTCTGTCGAATTGG 202937
Query 20241 CCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCC 20300
|||| ||| | || || ||| || || |||| || ||||| |||||||| || || |
Sbjct 202936 CCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGCCTCCGAGGGCATTCTTC 202877
Query 20301 AGCCGGACATGTGGGGCGTCA------CTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTG 20354
|| |||||||||| ||| | |||| | |||| || ||||
Sbjct 202876 AGTTTGACATGTGGGACGTGAAGCCTTCTGACCTCTGGGAGTGGAATAGTCTGAAGGAGC 202817
Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414
|||||||| || || |||||||||| |||| |||| |||||||| || || || |
Sbjct 202816 AGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCCCCCATGCCTACGGCTTCTA 202757
Query 20415 CCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGC 20474
|| | ||||| | || ||||| ||| |||||||| |||||| ||||||| ||| |
Sbjct 202756 CCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTACACGTCCAACATTTACCAAC 202697
Query 20475 GTCGTACACTGGCCGGTGAGTTC 20497
| ||| ||||| ||||| |||
Sbjct 202696 GCCGTGTCCTGGCAGGTGAATTC 202674
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| ||||| |||||||||||||||||||| ||| ||||| ||| | ||||||
Sbjct 202354 GTGCGCAAGTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAA 202413
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | |||| ||| | | || | || |||| ||||| || ||||||||||||||||||
Sbjct 202414 GTGATCTTGCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATG 202473
Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332
| ||||| ||||| || |||||
Sbjct 202474 AAAGCACCACGGTCAGCAGCCAT 202496
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 20672 ATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAG 20731
||||| || || || || || | |||||||||||||||||| || || | |||| ||
Sbjct 202496 ATGGCTGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCACATGAAG 202437
Query 20732 AATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAG 20791
|||| | ||| ||| | | |||||||| | ||||||| | ||| ||||||
Sbjct 202436 GATCCCACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAG 202377
Query 20792 ACGGGCATGTACTATCTGCGGACCCGAGC 20820
|||||||||||||| |||| || | |||
Sbjct 202376 ACGGGCATGTACTACTTGCGCACGCAAGC 202348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548506767247200
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