Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 214 2e-50 >seq5 Length=693879 Score = 214 bits (236), Expect = 2e-50 Identities = 364/516 (71%), Gaps = 10/516 (2%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || |||||| | || || || ||||||||||| || ||| |||| ||||| Sbjct 203988 CTTCACACACGCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTC 203929 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 |||||||| || | |||||||| ||| ||||| |||||||| || ||||||||| Sbjct 203928 TTGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGAC 203869 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGT 53449 || ||| ||||||||| | | ||||||||||| | | || || | || | || Sbjct 203868 CTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA-TG-TCCACCGCATTCGC 203811 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG-CCGATGGAATCGTGCCTATGCT 53508 || | ||| | || || || ||||| | || || |||| || | || ||||| Sbjct 203810 GCCACTGGCTCCTACATTGCCGGCACCAACGG-GACGTCCAATGGTGTCATTCCCATGCT 203752 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTC 53568 || || ||||||||||||||| | || ||| |||||||||| ||||| || | Sbjct 203751 TCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGGTGGCAACAAGCGACCTGGCGC 203692 Query 53569 GTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT 53628 || ||||| ||| | ||||| ||||||||||| | | ||||| || || |||| Sbjct 203691 TTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAA 203632 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 |||||| || | ||||| | || ||| ||||| | || ||||| |||||||| | Sbjct 203631 GAATCACGGCAAGGAAGAAGTCCG-TGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCG 203573 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 | || |||||| | || |||||| ||| || ||| ||||||||||| ||||| | Sbjct 203572 ATCTTTTCATGAAGCGCGTCGAGAAGAACGGTGATTGGACTCTGATGTGCCCCAACGAAT 203513 Query 53748 GCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 |||||||||| | | || |||||| ||||||||| Sbjct 203512 GCCCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTT 203478 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||| |||||||| | ||||||||||||||||||||| ||||| |||| || |||| Sbjct 202491 TGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCACATGAAGGATCC 202432 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | || ||||||||| ||| ||||| ||| ||||||||||| Sbjct 202431 CACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGG 202372 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| |||| || Sbjct 202371 CATGTACTACTTGCGCAC 202354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198010274000