Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 293 3e-74 seq20 212 7e-50 seq13 152 6e-32 seq4 123 3e-23 >seq5 Length=693879 Score = 293 bits (324), Expect = 3e-74 Identities = 1138/1758 (65%), Gaps = 73/1758 (4%) Strand=Plus/Plus Query 80036 GCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAG 80095 |||| |||| |||||||||||||||||||||||| ||||||||| | |||||| | Sbjct 202352 GCGTGCGCAAGTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGG 202411 Query 80096 AACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155 || ||| ||| | | ||||| | || |||| ||||| |||||||| ||||| || Sbjct 202412 AAGTGATCTTGCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGA 202471 Query 80156 TGAAAGCCCCACGATCTGCCGCCATTT-CAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||||||| ||||| || || ||||| | || | || | || | | ||||||||| || Sbjct 202472 TGAAAGCACCACGGTCAGCAGCCATCTGCACGACGTGTCGTT-GAGAAATTTCCCAAACA 202530 Query 80215 GTACGATACAC--CTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGT 80272 || || | ||| || | || | || |||| | | | | | || ||||| Sbjct 202531 GTTTTGTAGAGAGCTTT-GATG-TCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGT 202588 Query 80273 CCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTT 80329 || |||| | || |||| || | ||| | || | | | ||||||| Sbjct 202589 TCTCGGCAATGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTT 202648 Query 80330 TCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACA 80386 ||| || | | ||| || | || | || || || ||| || || | || | Sbjct 202649 TCAGCAGCCAGGGGTTGACAACCTGGA---ATTCACCTGCCAGGACACGGCGTTGGTAAA 202705 Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446 ||| | ||||||||||| || ||| ||||| || || ||||||| || |||| Sbjct 202706 TGTTGGACGTGTAAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCG 202765 Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA 80506 | ||||| ||| ||| || |||||| || || | || |||| |||||| | ||| || Sbjct 202766 TAGGCATGGGGGCGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCA 202825 Query 80507 AA----TCTGA--CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCAA 80558 | || ||| | ||| || ||| | || |||||||||| ||| | Sbjct 202826 GACTATTCCACTCCCAGAGGTCAG----AAGGCT-TCACGTCCCACATGTCAAACTGAAG 202880 Query 80559 GATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAG 80618 |||||||| || || ||||| ||| | || || ||| || || | | |||||||| Sbjct 202881 AATGCCCTCGGAGGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAA 202940 Query 80619 CTC-ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACAC 80677 || ||| || | | ||||| || || || ||| |||||| | |||||| | Sbjct 202941 TTCGACA-GAGGCAGTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCT 202999 Query 80678 CGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737 | || |||| ||| || || | || || || | ||| |||| || || |||| Sbjct 203000 CACGGGCCTCAGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCT 203059 Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC--GGCCTCCGGAATTGG 80795 | ||||| | | ||||| ||||| ||| |||| | | | || ||||||| | | || Sbjct 203060 GGACGCCAACACCAATCGGCCGGTGTCGCATGTT-GCT-GTTCCGGGCCTCCTGGACGGG 203117 Query 80796 GTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATG 80855 ||| ||| ||| |||| | |||||||||||| ||| ||| | || || || || Sbjct 203118 GTAGTGGTTGACATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTG 203177 Query 80856 AAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGA 80909 || ||||| |||||| | | ||| | || || || || || ||| || Sbjct 203178 GAGCTTCTGGAAGTCGTAGCGTCCCTCGTTGTAGTCTACGAAGGCAGGCAGAGCCAGAGA 203237 Query 80910 CGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAA 80969 |||| ||||| || || ||||| |||| | | ||||||| ||||||||||| | Sbjct 203238 GGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAG 203297 Query 80970 ATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || || ||||| |||| ||| |||||||| ||| |||||| || ||||| Sbjct 203298 GTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 203357 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 |||| |||| | || |||| ||||| ||| | || ||||||| || ||| | || Sbjct 203358 GTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTT 203417 Query 81090 GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTC 81149 | || | | || ||||| || | ||||||| | || | || Sbjct 203418 CTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 203477 Query 81150 GAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCC 81208 |||| | |||| | || |||| ||| | ||||| ||||| ||||||||||| || Sbjct 203478 AAACTCCTCGCCGTAGCAG-TCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCC 203536 Query 81209 AGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACA 81268 | || || ||||| || |||||||||| || || ||||| || || ||| | Sbjct 203537 AATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATA 203596 Query 81269 GGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 || || ||| || | || || | || || || ||||| || || || || | Sbjct 203597 AATCACGAGCA-CGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAAC 203655 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGC--GATCGAC----CCCTTGCGACGGCCA 81381 | || || ||||| ||||||| || | ||| | || | | |||| |||| Sbjct 203656 ACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTG---TTGCCA 203712 Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441 ||||||| ||| || | ||| || ||| || ||||| | ||| || |||| ||||| Sbjct 203713 CCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTG 203772 Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAA 81499 ||| ||||| || || | || || || ||||||| | | || ||| || Sbjct 203773 GACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAA- 203831 Query 81500 GACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTC 81559 ||||| ||||| | | ||| || ||| || || || | || ||||| || | Sbjct 203832 -GCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGC 203890 Query 81560 CCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGA-AACAGCTTGACATCTGAGG 81611 |||||||||| || | |||||||| |||||||| ||||| |||||| ||||| Sbjct 203891 CCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGC-TGACAT-TGAGG 203948 Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 || ||| || ||||| ||||| || | ||||| |||| | | ||||| Sbjct 203949 ------TGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACAT 204002 Query 81672 CAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACG 81731 || | ||||||||| ||| || ||||| ||| || || |||| ||| ||||| Sbjct 204003 GAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACG 204062 Query 81732 CATAAACATGTACTGGGG 81749 ||||| ||||| |||||| Sbjct 204063 CATAATCATGTGCTGGGG 204080 >seq20 Length=366416 Score = 212 bits (234), Expect = 7e-50 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || |||||||||||||| || ||||||||||| |||||| | Sbjct 156893 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 156834 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || |||||||||||||||||||||||||| ||||| Sbjct 156833 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 156774 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| || ||||| | || ||||| |||||||| || Sbjct 156773 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 156714 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| ||||| || | || || || ||||| Sbjct 156713 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTCCGCCTCCGTGGTGG 156667 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| | ||||| ||||| ||||| || ||||| || || ||||| || | Sbjct 156593 TTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCG 156534 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 ||| | || | || ||||| |||||||| || |||||||| |||||||||||||| | Sbjct 156533 ACAATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGA 156474 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 |||| ||||| || || | || || | ||||| || || || ||||| |||| |||| Sbjct 156473 TTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGG 156414 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| |||||||| || | || || || || || Sbjct 156413 AGTCCACACTTCATCTTGTTCTCCGCCTCCGTGGCGG 156377 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| || || | Sbjct 156375 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 156316 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || ||||| ||||| || || |||||||| |||||| Sbjct 156315 GACACAATAGACAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCAG 156256 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || || || || ||||||| || || || |||||||| || Sbjct 156255 CAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAAC 156196 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || | || | || |||||| | || ||||| || Sbjct 156195 ATTCAGAAGGAGTCAACCTTGCACTTGGTGTTGCGTTTGCGTGGTGGCCA 156146 >seq13 Length=451911 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || || ||||| ||||| Sbjct 17501 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 17442 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | ||||| |||||||||||||| || || ||||||||| Sbjct 17441 GACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 17382 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| |||||||||| || ||||| || ||||| || Sbjct 17381 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAAC 17322 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || | || |||| || || ||||| Sbjct 17321 ATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGG 17275 >seq4 Length=697727 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| | || || ||||| || || || ||||| ||||| ||| | || Sbjct 592124 TTCGTCAAGACCTTGACGGGTAAGACCATCACCCTAGAGGTCGAGTCCTCTGACACAATC 592183 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | || | || || ||||| |||||||| ||||| || ||||||||||| | Sbjct 592184 GACAATGTCAAATCCAAGATACAGGATAAGGAGGGTATTCCCCCTGACCAGCAGCGATTG 592243 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| || ||||||| || ||||| |||||||| ||| |||| ||| Sbjct 592244 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCAGAAG 592303 Query 27595 G 27595 | Sbjct 592304 G 592304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570291651045600