Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq20 176 1e-38 seq13 154 3e-32 seq4 125 2e-23 seq5 84.2 5e-11 >seq20 Length=366416 Score = 176 bits (194), Expect = 1e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| |||||||| || |||||||||||||| || || || | || ||| Sbjct 156392 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCT 156451 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| ||||| || || || || ||||||||||||| ||||||||||| Sbjct 156452 TCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 156511 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||| || || ||||| || ||||| ||| |||||||| || || ||| Sbjct 156512 TGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTC 156571 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 ||||| || | |||||| |||| Sbjct 156572 TTTCCGGTCAAAGTCTTGACAA 156593 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || || ||||| || || ||||| |||| |||||| || ||||| || || Sbjct 156179 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 156238 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||||||||| || || ||||| ||||||| ||||| ||||| || |||||| ||| Sbjct 156239 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 156298 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || |||||||| ||| ||||| || ||||| |||||||| ||||| ||| Sbjct 156299 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 156358 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 156359 TTGACGAAGATCTGCAT 156375 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||| || || || |||||||| || || || ||||| | || || Sbjct 156682 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 156741 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || || || || || |||||||||||||||| ||| ||||||||| Sbjct 156742 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 156801 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || |||||||||||||| || ||||| |||||||| ||| Sbjct 156802 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 156861 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || | |||||| Sbjct 156862 TTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893 >seq13 Length=451911 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||| ||| || |||||||| || || || ||||| | ||||| Sbjct 17290 AGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 17349 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || ||||| || || | || ||||||||| Sbjct 17350 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 17409 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| ||||||||||| || || |||||||| ||||||||| Sbjct 17410 TGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 17469 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 17470 TTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 17504 >seq4 Length=697727 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || ||||| || || || || ||||| | ||||| || ||||||||||| || ||||| Sbjct 592302 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 592243 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || |||||||| |||| || ||||| ||||| ||||| ||| || || ||| Sbjct 592242 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 592183 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||||||| || ||||| || ||||| ||||| ||||| | ||||| || || Sbjct 592182 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 592124 >seq5 Length=693879 Score = 84.2 bits (92), Expect = 5e-11 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| |||||||| ||||||||||| ||| |||||| ||||| ||||| || Sbjct 203315 TTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAGGAT 203374 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | ||| ||| | || ||| | || ||| | ||| |||| |||||| || | ||| Sbjct 203375 TACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAATGGTCG 203434 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | || || ||| ||| ||||||| ||||| |||| || ||| || ||| Sbjct 203435 CACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGC 203494 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325 ||| | || ||||| || |||||||| | ||| |||| | ||||| | || | Sbjct 203495 AGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGA 203554 Query 178326 CTCGTTTCATGAAGAGGTC 178344 | || |||||||| || || Sbjct 203555 CGCGCTTCATGAAAAGATC 203573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159112940199950