Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq13 111 1e-19
seq20 95.1 1e-14
>seq13
Length=451911
Score = 111 bits (122), Expect = 1e-19
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || || |||||||| || || || || || ||||| || || || |
Sbjct 17286 GCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 17345
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| ||
Sbjct 17346 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTT 17405
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| |||||| |||| ||| | | | || ||| |||||||| || | ||||
Sbjct 17406 GTCCTGGATTTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 17464
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| | || || || || || || || || || ||||||||
Sbjct 17465 TCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 17504
>seq20
Length=366416
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126
|| || |||||||| || | || ||| || || || || || || |||||||| |||
Sbjct 156158 AAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGT 156217
Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186
| || ||||||||||| || || || ||||||||||||||||||| || | || |||
Sbjct 156218 CCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCT 156277
Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGT 39245
|||| | ||| | | || | ||| | | | || || || ||||| || | ||
Sbjct 156278 TTGT-CTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGT 156336
Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| | ||||| || || || || || ||||| |||||
Sbjct 156337 GATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429531831721190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |