Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq20 131 4e-25
seq13 122 2e-22
>seq20
Length=366416
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||| |||||||| ||||| || |||| ||||| || || | || | || ||
Sbjct 156682 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 156741
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| || || || || |||||||| || ||||| || ||||||||
Sbjct 156742 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 156801
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 156802 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 156861
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||||| | ||| | |||||
Sbjct 156862 TTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||| || || ||||| || || |||| || |||||||| | || | || |||
Sbjct 156392 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCT 156451
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | ||| || |||||||| || || || || ||||| || ||||| ||||||||||||
Sbjct 156452 TCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 156511
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| |||||| || ||| ||||| || || || | |||||| || | || || |||
Sbjct 156512 TGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTC 156571
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||||||| ||
Sbjct 156572 TTTCCGGTCAAAGTCTT 156588
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| || || || || | ||||| || || | || | ||||| || ||||| |||||
Sbjct 156179 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 156238
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
||||||||||| || || |||||||| ||||| ||||| |||||||| |||||| ||||
Sbjct 156239 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 156298
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
|| || || ||||| || | |||||| || | ||||| ||||| || || | ||
Sbjct 156299 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 156358
Query 225697 TTTATGAACACTTGCAT 225713
|| | ||| | |||||
Sbjct 156359 TTGACGAAGATCTGCAT 156375
>seq13
Length=451911
Score = 122 bits (134), Expect = 2e-22
Identities = 162/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | ||| || ||| || || |||| ||||| ||||||| ||
Sbjct 17280 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGT 17339
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||| ||||| || ||||| || || || ||
Sbjct 17340 GCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCC 17399
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| ||||| || ||| || ||||||||||| || | ||||| || |
Sbjct 17400 CTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAG 17459
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||||||| || || | || || | ||| | ||||| ||
Sbjct 17460 GGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 17504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192491015425220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |