Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq96 150 2e-31 >seq96 Length=87723 Score = 150 bits (166), Expect = 2e-31 Identities = 336/502 (67%), Gaps = 7/502 (1%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || || |||||||| ||||||||||| || || || ||||| ||||||| || || Sbjct 51979 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 52038 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| || ||||| |||||| | | || || | || | | || | | || | Sbjct 52039 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 52098 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || | ||| || || || || || || |||||||| | |||||| || | || Sbjct 52099 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 52158 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 | ||| | |||||| || |||||||||| ||||| ||||||||||| || ||| Sbjct 52159 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 52218 Query 48090 GATGTT--ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 |||| | | | | || || | | | | | ||| || || || || |||| Sbjct 52219 --TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAA 52276 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 | || || ||||| ||||| | ||||||||||| || || ||||||||||||| Sbjct 52277 AGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCA 52336 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267 | | ||||| || || ||||| || || | || |||| || ||||| || |||| Sbjct 52337 TCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTT 52396 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCCACC 48324 | ||||| ||||| || | | || || | |||| ||| ||| || ||||| | Sbjct 52397 CCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTTGTCCTGAATCCAAC 52456 Query 48325 GTTGTGCCCAATCAGCCTTCTT 48346 | |||||||| |||||||| Sbjct 52457 GGATAGCCCAATCTGCCTTCTT 52478 Score = 113 bits (124), Expect = 6e-20 Identities = 227/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCAT--TGCTATCTTTAACGTAAGTATCTA 48420 || || |||||||| ||||| |||| || | |||| | || | ||| || || | Sbjct 52552 GTCTCGATAGCATTGAAGAGGTAGTTGCGTTGAGCATGCT--CCTTGATGTAGGTGTCGA 52609 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 |||| ||| || |||| ||||| ||||| || || ||||| ||||||||||| | Sbjct 52610 TTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGC 52669 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 | | || || | || || || || | || || ||| |||| ||||| || || | Sbjct 52670 AACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAA 52729 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 | || ||| |||||||| ||||| | | || || |||||||| || | | | Sbjct 52730 TGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCAT 52789 Query 48601 TCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 48657 ||| | || |||||||| | | |||||| || | ||| | ||||| || ||||| | Sbjct 52790 TCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGA 52849 Query 48658 ATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | || ||||| || ||||| ||||| | ||| || Sbjct 52850 AAGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 52883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694645962763200