Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq20 116 9e-21 seq13 96.9 8e-15 >seq20 Length=366416 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || || |||||||| || || | || | ||||| || || ||||||| Sbjct 156179 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 156238 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||||||||| | ||||||||| | | || ||||| || |||||||| ||| || Sbjct 156239 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 156298 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | |||| |||| ||| || || ||||| || || || || || ||||| ||| Sbjct 156299 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 156358 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||||| |||||| Sbjct 156359 TTGACGAAGATCTGCAT 156375 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||||||||| || ||||| || |||||||| |||||||| | || | Sbjct 156385 GAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACG 156444 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| | ||| || ||||| || || | ||||||||| | | || ||||| Sbjct 156445 GCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTC 156504 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| ||| ||||||| | || | | || ||| || || || || || Sbjct 156505 CTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGT 156564 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCAC 152092 ||| || || || || | |||||| || Sbjct 156565 AATGGTCTTTCCGGTCAAAGTCTTGAC 156591 Score = 105 bits (116), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| |||||||| ||||| || || || ||||||||||| || || | || | Sbjct 156675 GAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCG 156734 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || || || || || | ||| ||||| | | ||||| Sbjct 156735 GCCGTCCTCAAGCTGCTTT--CCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCC 156792 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || |||||| | || | | |||| || ||| || |||||| Sbjct 156793 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGA 156852 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || || ||||| | |||||| Sbjct 156853 GTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893 >seq13 Length=451911 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| ||||| | || | ||||| || || || || || || Sbjct 17310 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 17369 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||||||||| | | ||| || ||||| || || ||||| ||||| | Sbjct 17370 GATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTT 17429 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| ||| ||| || || || || || || || || ||||| ||||| || Sbjct 17430 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGAC 17489 Query 152093 GAAGACCTGCATTTTACC 152110 ||| | |||||| || || Sbjct 17490 GAAAATCTGCATCTTGCC 17507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153781919844730