Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13 143 2e-29 seq20 132 3e-26 seq4 95.1 9e-15 >seq13 Length=451911 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| || ||||||||||| ||||||||||| ||||| Sbjct 17275 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 17334 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||| | |||||||| |||| || Sbjct 17335 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 17394 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| || || ||| | | | |||||||||| || |||||| Sbjct 17395 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 17454 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| || ||||||||||| ||||| || ||||| Sbjct 17455 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 17501 >seq20 Length=366416 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| ||| | || |||||| || |||||||| || || ||| || | || Sbjct 156163 CAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATC 156222 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || ||||| |||||||| ||||| | ||||||||| || | ||| | ||||| || || Sbjct 156223 CTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTC 156282 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||||| | |||| ||||| | ||||||||||| | || || || Sbjct 156283 TTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGT 156342 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| ||||||||||| |||||||| ||||| Sbjct 156343 CTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375 Score = 113 bits (124), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || ||||| ||| |||| || |||||||| || ||||| Sbjct 156703 TCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAA 156762 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 |||| |||||| || || | ||| | || ||||| ||| ||||| ||| || || Sbjct 156763 ATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 156822 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | |||||||| | || || ||||| | || || ||||| || || ||||| || | Sbjct 156823 T--CGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGA 156880 Query 44325 CGAAGATTTGCATGA 44339 |||| || ||||||| Sbjct 156881 CGAAAATCTGCATGA 156895 Score = 105 bits (116), Expect = 5e-18 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| |||||||| ||||||||||| || |||| ||| Sbjct 156395 ACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCTTCC 156454 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || || || |||| ||||||||| || | ||| | |||||||| || Sbjct 156455 AACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGA 156514 Query 44249 ATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| || || || ||| | || || || | ||||||||||| | ||||| ||| Sbjct 156515 ATCTT-TGATTTGACATTGT--CGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTC 156571 Query 44306 TTTCCCGTGAGGGTCTTCAC 44325 ||||| || | ||||| || Sbjct 156572 TTTCCGGTCAAAGTCTTGAC 156591 >seq4 Length=697727 Score = 95.1 bits (104), Expect = 9e-15 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||| ||||| || || || || | || || |||||||| || ||||||| Sbjct 592304 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 592245 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | ||| ||||| ||| |||||| || || ||| Sbjct 592244 TCAATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGT 592185 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | || || ||||| ||||| | |||||| || Sbjct 592184 --CGATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGAC 592127 Query 44326 GAA 44328 ||| Sbjct 592126 GAA 592124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359978861182710