Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq13 143 2e-29
seq20 132 3e-26
seq4 95.1 9e-15
>seq13
Length=451911
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || ||||| ||| || ||||||||||| ||||||||||| |||||
Sbjct 17275 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 17334
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || || |||||||| || |||||||| | |||||||| |||| ||
Sbjct 17335 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 17394
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| || ||||| ||| || || ||| | | | |||||||||| || ||||||
Sbjct 17395 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 17454
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| | || |||||||| || ||||||||||| ||||| || |||||
Sbjct 17455 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 17501
>seq20
Length=366416
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|||||||| ||| | || |||||| || |||||||| || || ||| || | ||
Sbjct 156163 CAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATC 156222
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| ||||| |||||||| ||||| | ||||||||| || | ||| | ||||| || ||
Sbjct 156223 CTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTC 156282
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
||||| ||||| | |||| ||||| | ||||||||||| | || || ||
Sbjct 156283 TTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGT 156342
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| ||||||||||| |||||||| |||||
Sbjct 156343 CTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375
Score = 113 bits (124), Expect = 3e-20
Identities = 143/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| || ||||| ||| |||| || |||||||| || |||||
Sbjct 156703 TCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAA 156762
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264
|||| |||||| || || | ||| | || ||||| ||| ||||| ||| || ||
Sbjct 156763 ATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 156822
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
| | |||||||| | || || ||||| | || || ||||| || || ||||| || |
Sbjct 156823 T--CGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGA 156880
Query 44325 CGAAGATTTGCATGA 44339
|||| || |||||||
Sbjct 156881 CGAAAATCTGCATGA 156895
Score = 105 bits (116), Expect = 5e-18
Identities = 145/200 (73%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| ||| |||||| |||||||| ||||||||||| || |||| |||
Sbjct 156395 ACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCTTCC 156454
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||| || || || || |||| ||||||||| || | ||| | |||||||| ||
Sbjct 156455 AACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGA 156514
Query 44249 ATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| || || || ||| | || || || | ||||||||||| | ||||| |||
Sbjct 156515 ATCTT-TGATTTGACATTGT--CGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTC 156571
Query 44306 TTTCCCGTGAGGGTCTTCAC 44325
||||| || | ||||| ||
Sbjct 156572 TTTCCGGTCAAAGTCTTGAC 156591
>seq4
Length=697727
Score = 95.1 bits (104), Expect = 9e-15
Identities = 132/183 (72%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||| ||||| || || || || | || || |||||||| || |||||||
Sbjct 592304 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 592245
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | ||| ||||| ||| |||||| || || |||
Sbjct 592244 TCAATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGT 592185
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | || || ||||| ||||| | |||||| ||
Sbjct 592184 --CGATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGAC 592127
Query 44326 GAA 44328
|||
Sbjct 592126 GAA 592124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359978861182710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |