Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq20 181 3e-40
seq13 159 8e-34
>seq20
Length=366416
Score = 181 bits (200), Expect = 3e-40
Identities = 164/205 (80%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||||||||| || |||||||| ||||||||| || |||
Sbjct 156372 CAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCTGAC 156313
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||||||| ||||||||||| || ||||| ||||||||
Sbjct 156312 ACAATAGACAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCAGCAG 156253
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||||||||| |||||||| || |||||| |||| ||||| || || ||| |
Sbjct 156252 CGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAACATT 156193
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || ||||| |||| ||||
Sbjct 156192 CAGAAGGAGTCAACCTTGCA-CTTG 156169
Score = 163 bits (180), Expect = 7e-35
Identities = 155/198 (78%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || ||| | || ||||| || || ||||||||||||||| || || || |||||
Sbjct 156591 GTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGAC 156532
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| |||||| ||||||||| ||||| ||||| || ||||| |||||||| || || ||
Sbjct 156531 AATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATT 156472
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||| || |||||| | ||||| || | || || |||||||||||| |||| || ||
Sbjct 156471 TTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAG 156412
Query 178113 TCAACACTGCATCTTGTT 178130
|| ||||| |||||||||
Sbjct 156411 TCCACACTTCATCTTGTT 156394
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| ||||| || || || || || ||||| || ||||| || || |||
Sbjct 156890 CAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCTGAC 156831
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| |||||||||||||| || ||||| ||||| ||||| ||
Sbjct 156830 ACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAACAG 156771
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || ||||| ||||| || || || | || || || || || ||| ||
Sbjct 156770 CGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAACATC 156711
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || |||||||| || ||||||||
Sbjct 156710 CAGAAGGAATCAACTCTCCATCTTGT 156685
>seq13
Length=451911
Score = 159 bits (176), Expect = 8e-34
Identities = 148/188 (79%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || |||||||| || |||||||||||||||||||| || |||
Sbjct 17498 CAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 17439
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| || || |||||||| || || ||||| || ||||||||
Sbjct 17438 ACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 17379
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| ||||| | || || ||||| || ||| ||
Sbjct 17378 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATC 17319
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 17318 CAGAAGGA 17311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203690638020220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |