Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq13 163 3e-35
seq20 122 8e-23
seq4 84.2 2e-11
>seq13
Length=451911
Score = 163 bits (180), Expect = 3e-35
Identities = 178/234 (76%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 17272 CCACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 17331
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
| |||||||| | || |||||||||||||| || || || || ||||| ||||| | |
Sbjct 17332 GCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGG 17391
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811
|| | || |||||||||| |||||| ||| ||| | | | |||||| |||||
Sbjct 17392 GGGATGCCCTCCTTGTCCTGGATTTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTC 17450
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| | || ||||| || || || || ||||| |||||||||||||| ||
Sbjct 17451 CACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 17504
>seq20
Length=366416
Score = 122 bits (134), Expect = 8e-23
Identities = 169/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||| ||||| || || |||||||| ||||| ||||| |
Sbjct 156666 GCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGC 156725
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| |||| || |||||||| || || || ||||| ||||||||||| | ||
Sbjct 156726 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGG 156785
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTC 41811
|| | |||||||||| ||| | || | ||| || | || | ||||| |||||
Sbjct 156786 AATTCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATGGTGTCAGATGACTC 156842
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| | || || || || || || || || || |||||||||||||||
Sbjct 156843 GACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATG 156894
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || | ||| ||||||| |||| || ||||||||||||||| ||||| |
Sbjct 156148 GCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGC 156207
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || | || || ||||| || |||||||| || || ||||| ||||| | ||
Sbjct 156208 AAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 156267
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
|| || || |||| | ||| | |||| |||| ||| | | | ||||| || |||
Sbjct 156268 AATGCCTTCTTTGT-CTTGAATCTTTGACTTC-ACGTTGTCTATTGTGTCAGAAGATTCC 156325
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 156326 ACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375
>seq4
Length=697727
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| || || ||||| | ||||| || | || || ||||||||||| || || |
Sbjct 592304 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 592245
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
||| ||||| ||||| | ||||| | |||||| ||| || | || | || || |
Sbjct 592244 TCAATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCC-TGTATCTTGGATTTGACATTG 592186
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||| | || || || |||||||||| ||||| |||
Sbjct 592185 TCGATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACG 592126
Query 41852 AAA 41854
|||
Sbjct 592125 AAA 592123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462288801756000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |