Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq36 127 2e-24 >seq36 Length=230664 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||||| || |||||||| || || Sbjct 21272 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 21331 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| |||| ||||||||| || |||| || | ||||||||| || Sbjct 21332 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 21391 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||| || | | ||| ||||||| | ||| Sbjct 21392 ATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACC 21451 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATA 21168 || | |||||||||||| ||||| || || ||||||| || Sbjct 21452 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACAACTA 21491 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | ||| | ||| || ||||| || ||||| ||||| || Sbjct 21562 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 21621 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| || || ||| |||| || | ||| ||||| || Sbjct 21622 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 21681 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || ||| | ||| Sbjct 21682 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 21741 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| | |||||||| || || ||||| Sbjct 21742 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422245135205828