Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 4e-34
seq103 147 2e-30
seq36 122 9e-23
>seq6
Length=626929
Score = 159 bits (176), Expect = 4e-34
Identities = 178/235 (76%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || ||||| || || || |||||| |||| || || |
Sbjct 11577 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 11518
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| ||||| | ||||| |||||||||||| | ||
Sbjct 11517 TCCGACACCATCGACAACG-TCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGA 11459
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| |||||||||| || ||||| ||||| || || | |||||||| ||||||
Sbjct 11458 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTA 11399
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||||||| ||| ||||| | ||| ||||| || | || || |||
Sbjct 11398 CAACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGTGGC 11344
>seq103
Length=87482
Score = 147 bits (162), Expect = 2e-30
Identities = 204/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | ||| ||| | || |||
Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || | ||||||| | || |||| ||| | ||| ||||||||
Sbjct 34729 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 34788
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | ||||| || || || ||| |||||||| ||||||||||| |||| |||||
Sbjct 34789 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGC 34848
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| || || || || | ||||| || ||||| ||||| || |||||| |||
Sbjct 34849 TTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 34908
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||| | |||||||||| || || | | |||||||| |||
Sbjct 34909 GAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTAC 34953
Score = 107 bits (118), Expect = 2e-18
Identities = 255/383 (67%), Gaps = 2/383 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| || ||||| | || ||||| | || ||| || ||||| | |||||
Sbjct 35075 AGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATCCAGCTTCGCCCAGCGCT 35134
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || || || ||||| || || | ||||| || ||| || | || || |
Sbjct 35135 TGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTCT 35194
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| || ||| | |||||||| || || ||| |||||| | ||||| | |
Sbjct 35195 GGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGTG 35254
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
| ||||||||||| ||||||||||| |||||| | || ||| ||| ||| | |
Sbjct 35255 ATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCACTTGAAGCACCGAGCCA 35314
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | | || |||| | || || || ||| |||||||| | || || |
Sbjct 35315 GCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAGAGTTTCTGA 35374
Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340
| || || |||| |||| ||| || || | ||| | | |||| || |||||
Sbjct 35375 CTGAGGCTTTGCCATGTGC-TCTACTTGGCATGAATGCCACATTGATGAAACAGTACATT 35433
Query 117341 GAGTTCGTCGCCGACAGGCTGCT 117363
||||| || ||||| | |||||
Sbjct 35434 GAGTTTGTAGCCGATCGCCTGCT 35456
>seq36
Length=230664
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || ||||||||| | || || ||| | |
Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| ||| |||| |||||||| ||||| || | |||||
Sbjct 21210 GACACAATAGACAACG-TGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCA 21152
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| || |||||||| || || | || || || ||||||||
Sbjct 21151 GCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAA 21092
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| ||||||||| | || |||| | |||||||| ||| | || |||
Sbjct 21091 CATTCAGAAGGAGTCAACCTTGCACTTGGTGTTGCGTTTGCGTGGTGGC 21043
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || || ||||| |||||||| | || ||||| | |
Sbjct 21788 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 21729
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || |||| ||||| ||||| || || | |||||
Sbjct 21728 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 21669
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | || || || ||||| || |||| ||||||||| |||||||||
Sbjct 21668 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 21609
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||| | || || ||||| ||| | |||
Sbjct 21608 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTCCGC 21573
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
||| |||| ||||| || ||||| || | |||||||| || || || | ||| |||||
Sbjct 21415 AAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCAA 21356
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||| |||| |||| || || ||| ||| || ||||||||||||||| |||| || ||
Sbjct 21355 ACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAGTCCACACTTCA 21296
Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916
||| || | ||| | | |||||
Sbjct 21295 TCTTGTTCTCCGCCTCCGTGGCGG 21272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515201598824080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |