Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 159 4e-34 seq103 147 2e-30 seq36 122 9e-23 >seq6 Length=626929 Score = 159 bits (176), Expect = 4e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| || || || |||||| |||| || || | Sbjct 11577 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 11518 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| ||||| | ||||| |||||||||||| | || Sbjct 11517 TCCGACACCATCGACAACG-TCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGA 11459 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| ||||| || || | |||||||| |||||| Sbjct 11458 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTA 11399 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||| ||| ||||| | ||| ||||| || | || || ||| Sbjct 11398 CAACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGTGGC 11344 >seq103 Length=87482 Score = 147 bits (162), Expect = 2e-30 Identities = 204/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||| | ||| ||| | || ||| Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | ||||||| | || |||| ||| | ||| |||||||| Sbjct 34729 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 34788 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | ||||| || || || ||| |||||||| ||||||||||| |||| ||||| Sbjct 34789 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGC 34848 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || || || | ||||| || ||||| ||||| || |||||| ||| Sbjct 34849 TTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 34908 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| | |||||||||| || || | | |||||||| ||| Sbjct 34909 GAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTAC 34953 Score = 107 bits (118), Expect = 2e-18 Identities = 255/383 (67%), Gaps = 2/383 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| | || ||||| | || ||| || ||||| | ||||| Sbjct 35075 AGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATCCAGCTTCGCCCAGCGCT 35134 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || || || ||||| || || | ||||| || ||| || | || || | Sbjct 35135 TGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTCT 35194 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || ||| | |||||||| || || ||| |||||| | ||||| | | Sbjct 35195 GGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGTG 35254 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | ||||||||||| ||||||||||| |||||| | || ||| ||| ||| | | Sbjct 35255 ATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCACTTGAAGCACCGAGCCA 35314 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | || |||| | || || || ||| |||||||| | || || | Sbjct 35315 GCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAGAGTTTCTGA 35374 Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 | || || |||| |||| ||| || || | ||| | | |||| || ||||| Sbjct 35375 CTGAGGCTTTGCCATGTGC-TCTACTTGGCATGAATGCCACATTGATGAAACAGTACATT 35433 Query 117341 GAGTTCGTCGCCGACAGGCTGCT 117363 ||||| || ||||| | ||||| Sbjct 35434 GAGTTTGTAGCCGATCGCCTGCT 35456 >seq36 Length=230664 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| | | Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| ||| |||| |||||||| ||||| || | ||||| Sbjct 21210 GACACAATAGACAACG-TGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCA 21152 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || |||||||| || || | || || || |||||||| Sbjct 21151 GCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAA 21092 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | || |||| | |||||||| ||| | || ||| Sbjct 21091 CATTCAGAAGGAGTCAACCTTGCACTTGGTGTTGCGTTTGCGTGGTGGC 21043 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| |||||||| | || ||||| | | Sbjct 21788 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 21729 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| || || | ||||| Sbjct 21728 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 21669 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || || || ||||| || |||| ||||||||| ||||||||| Sbjct 21668 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 21609 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||| | || || ||||| ||| | ||| Sbjct 21608 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTCCGC 21573 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 ||| |||| ||||| || ||||| || | |||||||| || || || | ||| ||||| Sbjct 21415 AAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCAA 21356 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| |||| |||| || || ||| ||| || ||||||||||||||| |||| || || Sbjct 21355 ACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAGTCCACACTTCA 21296 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || | ||| | | ||||| Sbjct 21295 TCTTGTTCTCCGCCTCCGTGGCGG 21272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201598824080