Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 seq36 122 1e-22 >seq6 Length=626929 Score = 140 bits (154), Expect = 4e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || ||||| || || | Sbjct 11360 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 11419 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||||||||||||||| | || | || ||||||| Sbjct 11420 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 11479 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| |||| ||| | | | |||||| || ||||| |||| ||||| Sbjct 11480 TCCTGGATTTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 11538 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAtttt 43186 || || || || || ||||| || || || ||||| || Sbjct 11539 CGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 11577 >seq36 Length=230664 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 |||||||||||||| ||||| || |||||| ||||| ||||| || || || ||||| Sbjct 21053 AAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGT 21112 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || ||||| || || ||||| || || ||||||||||||| || | || || Sbjct 21113 CCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCT 21172 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144 |||| | ||| | |||| | ||| | | | ||||| |||||||| || | || Sbjct 21173 TTGT-CTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGT 21231 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAt 43183 |||||| || || || || ||||| || ||||| ||||| Sbjct 21232 GATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| |||||| || || || ||||| || || || || |||| || | ||| Sbjct 21295 ATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCTTCCAACTG 21354 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || |||||||| || || ||||||||||| | || | || ||||||| | ||| | | Sbjct 21355 TTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGT-CTTGAATCT 21413 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 ||| ||||| | | | || || |||||||| |||| || ||||| || || | Sbjct 21414 TTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTCTTTCCGG 21473 Query 43159 TTAGCGTCTTTACAA 43173 | | ||||| |||| Sbjct 21474 TCAAAGTCTTGACAA 21488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571798065281240