Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq6 116 2e-21
seq36 98.7 6e-16
>seq6
Length=626929
Score = 116 bits (128), Expect = 2e-21
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||||| ||| | || || || ||||| ||||||||||||| |
Sbjct 11348 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 11407
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| || || ||||| ||||||||||| |||
Sbjct 11408 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 11467
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| || ||||||||| || ||||| ||| | | | | || | |||| || || |
Sbjct 11468 ATGCCCTCCTTGTC--CTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCA 11525
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
| || | ||||| || || || ||||| || || || || |||||||||
Sbjct 11526 CCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATC 11575
>seq36
Length=230664
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||| || || | ||| ||| ||||| ||||||||||| | || ||| ||||
Sbjct 21577 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 21636
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || || ||||| || ||||| ||||| || | | |||||||||
Sbjct 21637 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 21696
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | || | || ||||| || | ||||||||
Sbjct 21697 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 21756
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| || ||||| || || ||||||||
Sbjct 21757 TTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
Score = 96.9 bits (106), Expect = 2e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||| || |||| ||| |||| |||| |||||||| ||||| ||||||
Sbjct 21308 TCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAA 21367
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || ||||||||||| || | || |||||||| |||||| || | || |
Sbjct 21368 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTG 21427
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||| | ||||| || || | || ||||| || ||||| | ||| || |||
Sbjct 21428 TCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACA 21487
Query 34379 A 34379
|
Sbjct 21488 A 21488
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || |||| | || ||||| ||| || || || ||||| ||||||||||| | |
Sbjct 21044 CCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTG-C 21102
Query 34223 AGCTGACGGT-CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
| || | || | || || | ||| || || ||||| || || |||||||||||| ||
Sbjct 21103 AAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 21162
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || || ||||| |||||| ||| | | | |||| | || | ||||| ||
Sbjct 21163 AATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCAC 21222
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| || || ||||| || || || |||||||||||
Sbjct 21223 CTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323061238976480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |