Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq103 96.9 3e-15 >seq103 Length=87482 Score = 96.9 bits (106), Expect = 3e-15 Identities = 177/259 (68%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||| || || ||||||||||| ||||| || || |||||||| | ||| || | | Sbjct 34927 TTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGA 34868 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||| ||||| | || | || | ||||| ||||| || || || || || | Sbjct 34867 CTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAATGCCGTCAGAGGCAG 34808 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAttttt---ttCGTTATCTGAAAGTTTTAACC 16709 |||| || || || ||||| || |||| ||| |||| || | | || || Sbjct 34807 CAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCATTCAGACGATTGTTCC 34748 Query 16710 AGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 |||| |||||||| || | ||||| |||||| | ||||| |||||||| | |||| Sbjct 34747 AGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGAAAGAAGCCTCGGCCT 34688 Query 16770 TTTTATACATTTTCCATAT 16788 |||| ||||||| ||| || Sbjct 34687 TTTTGTACATTTGCCAGAT 34669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462496199433800