Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4 354 7e-93
seq36 129 5e-25
seq103 123 2e-23
seq6 105 6e-18
>seq4
Length=676188
Score = 354 bits (392), Expect = 7e-93
Identities = 649/948 (68%), Gaps = 2/948 (0%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
||||| | ||||| || || ||||| || || | |||||| |||||||| || ||
Sbjct 640822 GAGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAA 640763
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || ||||| || |||||||||| || | ||||| | ||||
Sbjct 640762 AGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCC 640703
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | |||||||| ||| | ||| | ||| | ||| |
Sbjct 640702 TTGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGC 640643
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
|||| || ||| |||||||| ||| ||| || ||| ||||||| || | ||
Sbjct 640642 TTCTGGGCACGAATG-GTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGC 640584
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
||||| || | ||||| ||||| ||||||||||| ||| | || ||||| ||| |
Sbjct 640583 CTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGT 640524
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| || || || ||||| |||| |||||||| || ||||| ||||| |||
Sbjct 640523 CCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAA 640464
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
| || || || || || || || |||||| |||||| |||||| | || || ||
Sbjct 640463 TAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAA 640404
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
||| || || ||||| ||||| | ||||| |||||| ||||| |||| ||| ||||| ||
Sbjct 640403 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 640344
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||| || | ||||||||||||| | || | ||||| || | || ||| |||||
Sbjct 640343 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 640284
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
|| ||| ||| || | || || | || |||| | ||| || | || ||
Sbjct 640283 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 640224
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || || || || || ||||| ||||| || || ||||| |||||||||||
Sbjct 640223 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 640164
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
|||||||||||| || | |||| | ||| || || |||| || || || || |
Sbjct 640163 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 640104
Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805
|| ||| ||||| || |||||| || ||| | | ||||| |||| ||| ||
Sbjct 640103 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 640044
Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865
|| | | | ||||| | ||||| || |||| ||||| ||||| |||||||
Sbjct 640043 TTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTG 639984
Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925
|| |||| |||||| | |||||| | |||| |||||||| || | || || ||
Sbjct 639983 CTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTT 639924
Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| ||||| || | |||||| || || | || | || ||||| ||
Sbjct 639923 GAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGA 639876
Score = 132 bits (146), Expect = 4e-26
Identities = 374/565 (66%), Gaps = 17/565 (3%)
Strand=Plus/Minus
Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCG--GTTTG-GTGCGAAGATAATACATGCC 22164
|||||| || ||||| || | |||||| | | ||| ||||| | || ||||||||
Sbjct 641741 GTCCACGGTGAACTGGATAGG---TGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 641685
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224
|||||| || |||| ||||| || ||| || || || || | || || | | ||
Sbjct 641684 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 641625
Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284
| ||||| | || | ||||| ||| ||||| || || || || || || ||
Sbjct 641624 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 641565
Query 22285 CATATTTATCAA-TGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
||| | | | ||| || || |||||||| || || ||||| || |||| |
Sbjct 641564 CATCTGCACGACGTGT-CGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 641506
Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
| ||| || ||| |||| | ||| ||||| | | ||||| || || |
Sbjct 641505 CGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTCA 641446
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463
| | ||| ||| | || ||| || | |||||| | ||| |||| || || |
Sbjct 641445 TAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACCT 641386
Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523
| || || || | || ||| |||||||||||||||||||| ||| | || ||||| | |
Sbjct 641385 GGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACT 641326
Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583
||||||| || || ||||||| ||| ||||| || ||||| || || | ||| || ||||
Sbjct 641325 CATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAGT 641266
Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGCATCGACCAGTCCCACAGATCGG 22640
| | | || |||| |||| | | || ||| || | ||| ||||| || || |
Sbjct 641265 TGCGAATTCCATGCTCCTTGA---TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAG 641209
Query 22641 ACGGCGTCACATTGTCCCACATATC 22665
| ||| |||| ||||||||| ||
Sbjct 641208 AAGGCTTCAC---GTCCCACATGTC 641187
>seq36
Length=230664
Score = 129 bits (142), Expect = 5e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264
|| |||||| |||| || || || || ||| |||| || ||| | || || | | ||||
Sbjct 21486 GTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGAC 21427
Query 31265 ACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAAT 31323
| |||||| || ||| | | ||||||||||| | || || |||||||||||||| ||
Sbjct 21426 AATGTCAAATCAAAGATTCAAG-ACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGAT 21368
Query 31324 ATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGA 31383
|||||||||||||||||||||||| || | |||||||||||| || || ||
Sbjct 21367 TTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGA 21308
Query 31384 ATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || |||||||| || || | || | |||||||
Sbjct 21307 GTCCACACTTCATCTTGTTCTCCGCCTCCGTGGCGGTA 21270
Score = 86.0 bits (94), Expect = 6e-12
Identities = 116/160 (73%), Gaps = 10/160 (6%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || ||||| || || |||||| | || || ||| | ||
Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211
Query 31253 GACAGTGTCGA-AACG----GTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
|||| | || |||| |||||| | || ||||| |||||| | || ||||
Sbjct 21210 GACACAATAGACAACGTGAAGTCAAAGATTCAA-----GACAAAGAAGGCATTCCTCCCG 21156
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||||||| || ||||| || |||||| | || ||
Sbjct 21155 ACCAGCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGA 21116
>seq103
Length=87482
Score = 123 bits (136), Expect = 2e-23
Identities = 327/492 (66%), Gaps = 22/492 (4%)
Strand=Plus/Plus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG--GCCACGTTCGCCGAG 57971
|||||||||||| ||| | ||| ||||| || | | | ||| |||||| ||
Sbjct 35073 CAAGAAGGCAGATTGGGCTATCCGTTGGAT--TCAGGACAAAGAATCCAGCTTCGCCCAG 35130
Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031
| | | || || || ||||| |||||||| ||||| || ||||| | ||
Sbjct 35131 CGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATC 35190
Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091
|| ||| ||||||| || ||| |||||||||| || || || |||||| || || |||
Sbjct 35191 TTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCG 35250
Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151
|| || |||||||| || || || ||||| ||| | || |||||||| ||| | |
Sbjct 35251 CGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC-TTG---AAGCA 35306
Query 58152 CCGACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATG 58206
|||| || | || ||| | ||||| || || || ||| | ||||| || |
Sbjct 35307 CCGA-GCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAG 35365
Query 58207 AGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAA 58266
||||| | || || || | || || | || || ||||| |||||| |
Sbjct 35366 AGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAAAC 35425
Query 58267 AGTACATTGAGTTTGTTGCCGA----CAGACTTTTGCTCGAACTGATTGGAGAGCGTCAT 58322
|||||||||||||||| ||||| | | | |||||| | || |||| ||
Sbjct 35426 AGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAAT--GAGAAGGT--G 35481
Query 58323 TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAAC 58382
||||| ||| ||||| ||||| || ||| | ||||| | | ||||||||||||
Sbjct 35482 TACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAAC 35541
Query 58383 TTTTTCGAAAAA 58394
|| ||||| |||
Sbjct 35542 TTCTTCGAGAAA 35553
Score = 98.7 bits (108), Expect = 9e-16
Identities = 198/293 (68%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||||||||| || || || || ||||| | |||||| | || |||
Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728
Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || ||| || ||| ||| || || || || ||||| | |||| ||
Sbjct 34729 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 34788
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | |||| || || || || || || || ||||| |||||||| ||||| || |
Sbjct 34789 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGC 34848
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| ||||| | ||||| | |||||||||||||| || | ||
Sbjct 34849 TTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 34908
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || | || || |||| || || || | ||||| || ||| | |||||
Sbjct 34909 GAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 34961
>seq6
Length=626929
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || ||||| || ||||||||| |||| || || |
Sbjct 11577 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 11518
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | ||| ||||||||| ||| | || || |||
Sbjct 11517 TCCGACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGAC 11458
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || || |||||||| ||| | || ||
Sbjct 11457 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 11420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445751171505360
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