Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 354 7e-93 seq36 129 5e-25 seq103 123 2e-23 seq6 105 6e-18 >seq4 Length=676188 Score = 354 bits (392), Expect = 7e-93 Identities = 649/948 (68%), Gaps = 2/948 (0%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| | ||||| || || ||||| || || | |||||| |||||||| || || Sbjct 640822 GAGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAA 640763 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || ||||| || |||||||||| || | ||||| | |||| Sbjct 640762 AGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCC 640703 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | |||||||| ||| | ||| | ||| | ||| | Sbjct 640702 TTGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGC 640643 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 |||| || ||| |||||||| ||| ||| || ||| ||||||| || | || Sbjct 640642 TTCTGGGCACGAATG-GTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGC 640584 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||| || | ||||| ||||| ||||||||||| ||| | || ||||| ||| | Sbjct 640583 CTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGT 640524 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || || || ||||| |||| |||||||| || ||||| ||||| ||| Sbjct 640523 CCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAA 640464 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 | || || || || || || || |||||| |||||| |||||| | || || || Sbjct 640463 TAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAA 640404 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 ||| || || ||||| ||||| | ||||| |||||| ||||| |||| ||| ||||| || Sbjct 640403 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 640344 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || | ||||||||||||| | || | ||||| || | || ||| ||||| Sbjct 640343 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 640284 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 || ||| ||| || | || || | || |||| | ||| || | || || Sbjct 640283 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 640224 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| ||||| || || ||||| ||||||||||| Sbjct 640223 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 640164 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 |||||||||||| || | |||| | ||| || || |||| || || || || | Sbjct 640163 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 640104 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 || ||| ||||| || |||||| || ||| | | ||||| |||| ||| || Sbjct 640103 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 640044 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | ||||| | ||||| || |||| ||||| ||||| ||||||| Sbjct 640043 TTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTG 639984 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 || |||| |||||| | |||||| | |||| |||||||| || | || || || Sbjct 639983 CTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTT 639924 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||| || | |||||| || || | || | || ||||| || Sbjct 639923 GAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGA 639876 Score = 132 bits (146), Expect = 4e-26 Identities = 374/565 (66%), Gaps = 17/565 (3%) Strand=Plus/Minus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCG--GTTTG-GTGCGAAGATAATACATGCC 22164 |||||| || ||||| || | |||||| | | ||| ||||| | || |||||||| Sbjct 641741 GTCCACGGTGAACTGGATAGG---TGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 641685 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || |||| ||||| || ||| || || || || | || || | | || Sbjct 641684 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 641625 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | || | ||||| ||| ||||| || || || || || || || Sbjct 641624 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 641565 Query 22285 CATATTTATCAA-TGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | | ||| || || |||||||| || || ||||| || |||| | Sbjct 641564 CATCTGCACGACGTGT-CGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 641506 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | ||| || ||| |||| | ||| ||||| | | ||||| || || | Sbjct 641505 CGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTCA 641446 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| ||| | || ||| || | |||||| | ||| |||| || || | Sbjct 641445 TAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACCT 641386 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | || || || | || ||| |||||||||||||||||||| ||| | || ||||| | | Sbjct 641385 GGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACT 641326 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 ||||||| || || ||||||| ||| ||||| || ||||| || || | ||| || |||| Sbjct 641325 CATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAGT 641266 Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGCATCGACCAGTCCCACAGATCGG 22640 | | | || |||| |||| | | || ||| || | ||| ||||| || || | Sbjct 641265 TGCGAATTCCATGCTCCTTGA---TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAG 641209 Query 22641 ACGGCGTCACATTGTCCCACATATC 22665 | ||| |||| ||||||||| || Sbjct 641208 AAGGCTTCAC---GTCCCACATGTC 641187 >seq36 Length=230664 Score = 129 bits (142), Expect = 5e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || |||||| |||| || || || || ||| |||| || ||| | || || | | |||| Sbjct 21486 GTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGAC 21427 Query 31265 ACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAAT 31323 | |||||| || ||| | | ||||||||||| | || || |||||||||||||| || Sbjct 21426 AATGTCAAATCAAAGATTCAAG-ACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGAT 21368 Query 31324 ATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGA 31383 |||||||||||||||||||||||| || | |||||||||||| || || || Sbjct 21367 TTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGA 21308 Query 31384 ATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || || | || | ||||||| Sbjct 21307 GTCCACACTTCATCTTGTTCTCCGCCTCCGTGGCGGTA 21270 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/160 (73%), Gaps = 10/160 (6%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || |||||| | || || ||| | || Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211 Query 31253 GACAGTGTCGA-AACG----GTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||| | || |||| |||||| | || ||||| |||||| | || |||| Sbjct 21210 GACACAATAGACAACGTGAAGTCAAAGATTCAA-----GACAAAGAAGGCATTCCTCCCG 21156 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||||| || ||||| || |||||| | || || Sbjct 21155 ACCAGCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGA 21116 >seq103 Length=87482 Score = 123 bits (136), Expect = 2e-23 Identities = 327/492 (66%), Gaps = 22/492 (4%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG--GCCACGTTCGCCGAG 57971 |||||||||||| ||| | ||| ||||| || | | | ||| |||||| || Sbjct 35073 CAAGAAGGCAGATTGGGCTATCCGTTGGAT--TCAGGACAAAGAATCCAGCTTCGCCCAG 35130 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | | | || || || ||||| |||||||| ||||| || ||||| | || Sbjct 35131 CGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATC 35190 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| ||||||| || ||| |||||||||| || || || |||||| || || ||| Sbjct 35191 TTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCG 35250 Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151 || || |||||||| || || || ||||| ||| | || |||||||| ||| | | Sbjct 35251 CGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC-TTG---AAGCA 35306 Query 58152 CCGACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATG 58206 |||| || | || ||| | ||||| || || || ||| | ||||| || | Sbjct 35307 CCGA-GCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAG 35365 Query 58207 AGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAA 58266 ||||| | || || || | || || | || || ||||| |||||| | Sbjct 35366 AGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAAAC 35425 Query 58267 AGTACATTGAGTTTGTTGCCGA----CAGACTTTTGCTCGAACTGATTGGAGAGCGTCAT 58322 |||||||||||||||| ||||| | | | |||||| | || |||| || Sbjct 35426 AGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAAT--GAGAAGGT--G 35481 Query 58323 TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAAC 58382 ||||| ||| ||||| ||||| || ||| | ||||| | | |||||||||||| Sbjct 35482 TACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAAC 35541 Query 58383 TTTTTCGAAAAA 58394 || ||||| ||| Sbjct 35542 TTCTTCGAGAAA 35553 Score = 98.7 bits (108), Expect = 9e-16 Identities = 198/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || || || || ||||| | |||||| | || ||| Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| || ||| ||| || || || || ||||| | |||| || Sbjct 34729 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 34788 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | |||| || || || || || || || ||||| |||||||| ||||| || | Sbjct 34789 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGC 34848 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||||| | ||||| | |||||||||||||| || | || Sbjct 34849 TTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 34908 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || | || || |||| || || || | ||||| || ||| | ||||| Sbjct 34909 GAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 34961 >seq6 Length=626929 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || ||||| || ||||||||| |||| || || | Sbjct 11577 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 11518 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | ||| ||||||||| ||| | || || ||| Sbjct 11517 TCCGACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGAC 11458 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || |||||||| ||| | || || Sbjct 11457 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 11420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751171505360