Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq4 174 2e-38
seq103 147 3e-30
>seq4
Length=676188
Score = 174 bits (192), Expect = 2e-38
Identities = 456/689 (66%), Gaps = 14/689 (2%)
Strand=Plus/Minus
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
|| ||||| | || ||||||| | ||| || |||| | || || || ||||| ||
Sbjct 640549 GGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAA 640490
Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
||||| |||||||||||||| | |||| ||| | | | ||| || || || |
Sbjct 640489 AGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGA 640430
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
|||||| | ||| |||||| | | | ||| | ||||| || |||||||| |||||
Sbjct 640429 TTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCA 640370
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | | ||||| || ||||| || ||||| || | ||||| || ||||| || ||||
Sbjct 640369 AAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACA 640310
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| | ||| ||||| | ||| || || | || ||||| |||| || ||| ||| ||
Sbjct 640309 CGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTG 640250
Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
|| ||||| | ||| | || || || || || ||||| || ||||| | ||||
Sbjct 640249 GCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGGCGC 640192
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| || | ||||||||||||||| || ||||| || || |||||| | || |
Sbjct 640191 AGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA--- 640135
Query 63640 AGCTAGACATTTGGTGAC---GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696
||| |||| | |||| ||| || || || || |||| || || || ||||| |
Sbjct 640134 AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTG 640075
Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756
| || ||| || | |||| ||| || || | || || |||| |
Sbjct 640074 TGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCC 640015
Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816
|| || || ||||||||||| | ||||||||| |||| || ||||| ||| ||| |
Sbjct 640014 AGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGA 639955
Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 63874
|| | | || || |||||||| || || ||||| || | || ||||| ||
Sbjct 639954 GCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA--TC 639897
Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCT 63903
|| || || | ||| | || | |||||
Sbjct 639896 TCTGTCATAGACAATGGCGGAGTCGAGCT 639868
>seq103
Length=87482
Score = 147 bits (162), Expect = 3e-30
Identities = 298/441 (68%), Gaps = 10/441 (2%)
Strand=Plus/Minus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|| ||||| |||||||| ||||| ||||| || || || || || ||||||| || ||
Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
|||||||| ||||| ||||| | ||||| | || | | || | || || |
Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
| | ||| || || || || || || |||||||| | |||||| || | ||
Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
| ||| | |||| |||| ||||| |||| || |||| || |||| ||| |||||
Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334
Query 33531 A-----ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATG 33585
||| | | | || | ||||||| | | | | || || ||| || |
Sbjct 35333 TGTTGGATC-ATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 35279
Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645
| || || |||||||||||| || | ||||||||||| || || ||||| ||||
Sbjct 35278 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 35219
Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705
|||| | ||||||||| || ||||| || || ||||| || | ||| ||||| || |
Sbjct 35218 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 35159
Query 33706 CTTCTACTGCAGCAAAGGCAA 33726
|||| || |||||||| ||||
Sbjct 35158 CTTCCACGGCAGCAAAAGCAA 35138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629796083856240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |