Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4 179 5e-40
seq103 134 2e-26
>seq4
Length=676188
Score = 179 bits (198), Expect = 5e-40
Identities = 458/690 (66%), Gaps = 14/690 (2%)
Strand=Plus/Minus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
|| || ||||| | || ||||||| | ||| || |||| | || || || |||||
Sbjct 640552 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 640493
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
|| ||||| |||||||||||||| | |||||||| | | | ||| || || ||
Sbjct 640492 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 640433
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
||||||| | ||| |||||| | | | ||| ||||| || |||||||| |||
Sbjct 640432 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 640373
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | | ||||| || ||||| || ||||| || | ||||| || ||||| || ||
Sbjct 640372 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 640313
Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311
|| | | ||| ||||| | ||||||||| || || ||||| |||| || ||| |||
Sbjct 640312 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCA 640253
Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369
| || ||||| | ||| | || || || || || ||||| || ||||| | |
Sbjct 640252 GTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 640195
Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429
|||| || | ||| |||||||||||||| || || || ||| |||||| | || |
Sbjct 640194 CGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 640135
Query 66430 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486
||| |||| | |||| || || || || || |||| || || || ||||
Sbjct 640134 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGT 640078
Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546
| || || ||| || | |||| ||| || || | || || |||| |
Sbjct 640077 GTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 640018
Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606
|| || || ||||||||||| | ||||||||| |||| || || |||||| ||
Sbjct 640017 CCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 639958
Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 66664
| | || | | || || |||||||| || || ||||| || | || |||||
Sbjct 639957 TGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA- 639899
Query 66665 GTCTCGTTCGTAAATAATAACCGAGTTGAG 66694
|||| || || | ||| | |||| |||
Sbjct 639898 -TCTCTGTCATAGACAATGGCGGAGTCGAG 639870
>seq103
Length=87482
Score = 134 bits (148), Expect = 2e-26
Identities = 295/440 (67%), Gaps = 8/440 (2%)
Strand=Plus/Minus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
|| ||||| |||||||| ||||| ||||| || || || || || | ||||| || ||
Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
|||||||| || || ||||| || || | || | | || | || || |
Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046
| | ||| || ||||| || || || |||||||| | |||||| || | ||
Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394
Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106
| ||| | |||| |||| ||||| |||| || || | ||| || ||||| |||||
Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334
Query 36107 GAT---ATTA-CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 36162
| || | ||| || | ||||||| | | | | || || ||| || ||
Sbjct 35333 TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGGC 35278
Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222
|| || ||| |||||||| || | |||||||||||||| || ||||| |||||
Sbjct 35277 AAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGG 35218
Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282
||| | ||||||||| || ||||| || || || ||||| | || |||||||| ||
Sbjct 35217 CATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACC 35158
Query 36283 TTCTACTGCCGCAAAGGCAA 36302
||| || || ||||| ||||
Sbjct 35157 TTCCACGGCAGCAAAAGCAA 35138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658150315171720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |