Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq36 122 9e-23 >seq36 Length=230664 Score = 122 bits (134), Expect = 9e-23 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || |||||||| || ||||| | || ||||| || |||||||| || || Sbjct 21041 TGGCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCT 21100 Query 139595 CTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | ||| | || | || || |||||||| || || |||| ||||| ||||| ||||| Sbjct 21101 GCAAGTGTCCGTCCA-TCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGG 21159 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 ||| |||||||||||||| ||| | |||| || | | || | |||||| | | | Sbjct 21160 AGGAATGCCTTCTTTGTC-TTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATT 21218 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| ||| | ||||| || || | || || ||||| || |||||| Sbjct 21219 CCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATA 21271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | ||| | |||| || ||||| || || |||||||||||| Sbjct 21272 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 21331 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||| ||||| | |||||||| ||||| || ||||| Sbjct 21332 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 21391 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | |||| ||| | | || | || || | | ||||| Sbjct 21392 ATGCCTTCCTTGTC-TTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCAC 21450 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 ||| | ||| | ||||| |||||||| || || || Sbjct 21451 CTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496047053213600