Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 179 5e-40 seq103 152 7e-32 >seq4 Length=676188 Score = 179 bits (198), Expect = 5e-40 Identities = 458/690 (66%), Gaps = 14/690 (2%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || ||||||| || ||||||| | ||| || || | | || || || ||||| Sbjct 640552 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 640493 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || ||||| |||||||||||||| | |||| ||| | | | || || || || Sbjct 640492 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 640433 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||||| | ||| |||||| | | | ||| | ||||| || |||||||| ||| Sbjct 640432 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 640373 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | | || ||||| ||||| || ||||| || | ||||| || ||||| || || Sbjct 640372 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 640313 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| ||||| | ||||||||| || || ||||| |||| || ||| ||| Sbjct 640312 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCA 640253 Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 |||| ||||| | ||| | || || || || || ||||| || ||||| | | Sbjct 640252 GTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 640195 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 |||| || | ||| |||||||||||||| ||||| || || |||||| | || | Sbjct 640194 CGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 640135 Query 80309 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 ||| |||| | |||| || || || || || |||| || || || |||| Sbjct 640134 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGT 640078 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | || || ||| |||| |||| ||| || || | || || |||| | Sbjct 640077 GTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 640018 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 || || || ||||||||||| | ||||||||| |||| || || |||||| | Sbjct 640017 CCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 639958 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 80543 | | || | | || || |||||||| || || ||||| || | || ||||| Sbjct 639957 TGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA- 639899 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 |||| || || | ||| | |||| ||| Sbjct 639898 -TCTCTGTCATAGACAATGGCGGAGTCGAG 639870 >seq103 Length=87482 Score = 152 bits (168), Expect = 7e-32 Identities = 338/505 (67%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| |||||||| ||||| ||||| || || || || || ||||||| || || Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| ||||| ||||| | || || | || | | || | || || | Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | ||| || ||||| || || || |||||||| | |||||| || | || Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | ||| | |||| |||| ||||| |||| || |||| || |||||||| ||||| Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334 Query 49909 -----GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 49963 |||| | | | || | ||||||| | | | | || || ||| || | Sbjct 35333 TGTTGGATC-ATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 35279 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | || || |||||||||||| || | |||| ||||||||| || ||||| |||| Sbjct 35278 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 35219 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083 |||| | ||||||||| || ||||| || || || ||||| | || ||||| || | Sbjct 35218 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 35159 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCC 50140 |||| || || ||||| ||||| | | || | | |||| | |||| || |||| Sbjct 35158 CTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTTGTCCTGAATCC 35099 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTT 50165 | ||||||||| |||||||| Sbjct 35098 AACGGATAGCCCAATCTGCCTTCTT 35074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718244262142120