Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4 165 1e-35
seq103 156 6e-33
>seq4
Length=676188
Score = 165 bits (182), Expect = 1e-35
Identities = 397/596 (67%), Gaps = 10/596 (2%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || ||||| || || ||||||| | ||| || || | | | || || |||||
Sbjct 640552 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 640493
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|| ||||| |||||||||||||| | |||| ||| | | | || || || ||
Sbjct 640492 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 640433
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||||| | ||| |||||| | | | ||| | ||||| || |||||||| |||
Sbjct 640432 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 640373
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | ||||| || ||||| || ||
Sbjct 640372 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 640313
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| ||||| | ||||||||| | || ||||| |||| || ||| |||
Sbjct 640312 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCA 640253
Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
|||| ||||| || ||| | || || || || || ||||| || ||||| | |
Sbjct 640252 GTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 640195
Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391
|||| || | ||| |||||||||||||| || || || ||| |||||| | || |
Sbjct 640194 CGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 640135
Query 72392 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448
||| |||| | |||| || || || || || |||| || || || ||||
Sbjct 640134 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGT 640078
Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508
| || || ||| |||| |||| ||| || || | || || |||| |
Sbjct 640077 GTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 640018
Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564
|| || || ||||||||||| | ||| ||||| |||| || || ||||||
Sbjct 640017 CCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTG 639962
Score = 87.8 bits (96), Expect = 2e-12
Identities = 186/272 (68%), Gaps = 7/272 (3%)
Strand=Plus/Minus
Query 70794 GTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGT 70853
||||| || ||||| || || | || || |||| ||| || | ||||||||||| ||
Sbjct 641741 GTCCACGGTGAACTGGATAGGTGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCCCGT 641682
Query 70854 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGAT 70912
|| || || || |||| ||| ||| ||||| || | ||| |||| | ||||
Sbjct 641681 CTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAG-TGGGAT 641623
Query 70913 CGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCA 70972
| |||||||| || | ||||| || |||||||| || || | ||| |||||||
Sbjct 641622 CCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGCCA 641563
Query 70973 TTTTTATGATCGTCT-TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 71031
| | | || ||| | ||| | ||||||||||| |||||| || | || || ||
Sbjct 641562 TCTGCACGA-CGTGTCGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGTCG 641504
Query 71032 TCTGGAAGGTTTG---TATTCTGAATGGATCC 71060
| || | ||| | ||||||||||||| ||
Sbjct 641503 GCCGGGATGTTGGGGATATTCTGAATGGAACC 641472
>seq103
Length=87482
Score = 156 bits (172), Expect = 6e-33
Identities = 300/441 (68%), Gaps = 10/441 (2%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|| ||||| |||||||| ||||| ||||| || || ||||| || ||||||| || ||
Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
|||||||| ||||| ||||| | || || | || | | || | || || |
Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953
| | ||| || | || || || || |||||||| | |||||| || | ||
Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394
Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013
| ||| | |||| |||| ||||| |||| || || | ||| || ||||| |||||
Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334
Query 42014 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 42068
|||| | ||| || | ||||||| | | | | || || ||| || |
Sbjct 35333 TGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 35279
Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128
| || || ||||||||||||||| | |||||||||||||| || ||||| ||||
Sbjct 35278 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 35219
Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188
|||| | ||||||||| || ||||| || ||||| ||||| | || ||||| || |
Sbjct 35218 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 35159
Query 42189 CTTCTACTGCCGCAAAGGCAA 42209
|||| || || ||||| ||||
Sbjct 35158 CTTCCACGGCAGCAAAAGCAA 35138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671116272207080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |