Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq103 159 5e-34 >seq4 Length=676188 Score = 185 bits (204), Expect = 1e-41 Identities = 333/479 (70%), Gaps = 16/479 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || |||||| | ||| | |||||||| ||||||||||| || Sbjct 640341 CAGGGTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCACGCCGAT 640400 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || |||| || || ||| ||||| | || || | || Sbjct 640401 GTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCGTGCTCGTGAT 640460 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 || || ||| || ||| | || ||| | ||||||||||||||| || |||||| Sbjct 640461 TTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAACGGTG-- 640518 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||||||||| || | ||||| ||| | || |||| ||||| ||| Sbjct 640519 -ATTGGACTCTGATGTGCCCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAG 640577 Query 97113 TTTGAGGC---CAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGA 97168 |||||||| | | | | | || |||| |||||| | |||| ||| | ||| Sbjct 640578 TTTGAGGCTCTCTATGAAAAG---TATGAGCGTGAGGGCAAGGGTCGTGCGACCATTCG- 640633 Query 97169 TGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227 ||| | |||| || ||| | ||||| || ||| ||| |||||| || | ||| | || Sbjct 640634 TGC-CCAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTCA 640692 Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287 | |||||||||||| || || | || |||||||| ||||||| || ||| Sbjct 640693 TGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGCA 640752 Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||||||| || |||||||||||||| |||||| | | || || ||| || |||||| Sbjct 640753 GCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGC 640811 >seq103 Length=87482 Score = 159 bits (176), Expect = 5e-34 Identities = 204/274 (74%), Gaps = 14/274 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| || || ||||||| ||||||| |||||||| Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || || |||| ||| | | |||| ||| ||| |||| | | || || || Sbjct 34729 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 34788 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA-TCTGTTGACACG 125197 |||||| |||| |||||||| | ||| || || || |||||||| || | ||||| || Sbjct 34789 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGA-GCG 34847 Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAAT 125251 ||| || | || ||| | || |||| ||| ||||||||||||||||| || Sbjct 34848 CTTC-----AGCGGCGAAGTCCAAGTCCCTGAGG-CTCGTTGCTTTTACGGATTCCAGAT 34901 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCT 125285 |||||| ||||| | |||||||||| |||||| Sbjct 34902 CATGATGGAGAATATCCACTCGGAAACATACTCT 34935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741033883565080