Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq36 132 4e-26
seq6 91.5 1e-13
>seq36
Length=230664
Score = 132 bits (146), Expect = 4e-26
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || | ||| ||||||||||||||||| || || ||||| || | ||| || || |
Sbjct 21044 CCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTG-C 21102
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| ||||| | |||||| |||||||| ||| | ||||| | | ||||| || ||||
Sbjct 21103 A-AGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAG 21161
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| ||||||||||| | ||| |||| ||| ||| | | | ||||||| || |
Sbjct 21162 GAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCA 21221
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| |||| |||||||| ||||| || || || || || |||||||||||
Sbjct 21222 CCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
>seq6
Length=626929
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||||||||| || ||||| || | ||| || ||| || ||| | |
Sbjct 11360 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 11419
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || ||||||| | || ||||| ||||| || || || || |||
Sbjct 11420 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 11479
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||||| | ||||||| | ||| ||||| | || || || | |||||
Sbjct 11480 TCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATC 11539
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || || || || ||||||||
Sbjct 11540 GTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 11574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448275885251880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |