Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 426 4e-114 seq103 93.3 1e-13 >seq4 Length=676188 Score = 426 bits (472), Expect = 4e-114 Identities = 1091/1632 (67%), Gaps = 38/1632 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | | ||| |||| ||| Sbjct 640071 TTCACACACGCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCT 640130 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||||||||| |||| |||||| || |||| Sbjct 640131 TGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGACC 640190 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 || || | || ||||||| || || || || || || || ||||| |||| | Sbjct 640191 TGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAATG--TCCACCGCATTCGCG 640248 Query 363725 C-ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCT 363782 | || | | |||||| |||||| | |||| || ||||| | |||||||||| Sbjct 640249 CCACTGG-CTCCTACATTGCCGGCACCAACGGGACG-TCCAATGGTGTCATTCCCATGCT 640306 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 |||||| || |||| || || || || |||||||||||||| ||||| || || Sbjct 640307 TCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGGTGGCAACAAGCGACCTGGCGC 640366 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 ||||| || || | |||||| || |||||| | |||||||| ||||| | || || Sbjct 640367 TTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAA 640426 Query 363903 -AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 || ||| || || || ||| | ||||| |||||| | ||| ||| |||||| || | | Sbjct 640427 GAATCAC-GGCAAGGAAGAAGTCCGTGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCG 640485 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGA 364019 | | ||| ||||||||||| ||| | | | | ||||| | || | ||||| |||| Sbjct 640486 ATCTTTTCATGAAGCGCGTCGAG--AAGAACGGTGATTGGACTCTGATGTGCCCCAACGA 640543 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 ||| || || || | || | || || || | || ||||| || ||||||||||| Sbjct 640544 ATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCTCTCTATGAAAAGTATGA 640603 Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 ||||| |||| |||| ||| |||| || |||||||| |||| ||||| |||| Sbjct 640604 GCGTGAGGGCAAGGGTCGTGCGACCATTCGTGCCCAGAAGCTCTGGTACTCCATCCTGGA 640663 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 | |||| ||||| || | || | ||| | ||||| ||| | |||||| | ||| Sbjct 640664 GGCCCAGACAGAGACGGGTAATCCTTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAG 640723 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAAT 364258 ||||||| || || | || |||| || |||| |||||| || || || ||| | || | Sbjct 640724 CAACCAGAAGAACTTGGGAACAA-TCCGCAGCTCCAACCTTTGCACGGAAATTGTCGAGT 640782 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318 || | || || || ||| || || || ||| | || || | || || || || || | Sbjct 640783 ACTCTGCCCCTGATGAGGTCGCTGTTTGCAACTTGGCCTCTCTGGCTCTGCCTGCCTTCG 640842 Query 364319 TA------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTA 364372 || || || || | ||| |||| | || | || || ||| | | | Sbjct 640843 TAGACTACAACGAGGGACGCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTG 640902 Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTT 364432 | |||| || ||| | || || || | || || | | || ||| | Sbjct 640903 TTCGCAACCTGAACAGAATCATTGATGTCAACCACTACCCCGTCCAGGAGGCCCGGAACA 640962 Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492 || ||||| || || ||||||||| |||| || ||||| ||||| |||| ||| | Sbjct 640963 GCAACATGCGACACCGGCCGATTGGTGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCT-- 641020 Query 364493 TGC--TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 ||| | ||| ||||||| || ||||| || |||| || || ||| |||| ||||| Sbjct 641021 TGCCTTGCGCATGCCATTTGAGTCCCCTGAGGCCCGTGAGCTCAACAAGCAGATATTTGA 641080 Query 364551 AACAATGTATTTTGCCGCAATGACTGCTTCGTGT-GATTTGG-CAAAAACCAAGGGAAAG 364608 || || || ||| || | ||||| || ||| || |||| ||| | ||| ||| Sbjct 641081 GACCATCTACCATGCTGCCCTCACTGCCTC-TGTCGAATTGGCCAAGGAGCAA-GGACCT 641138 Query 364609 TACTCTACTTATGAGGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667 |||||||| | |||||| || ||| | | || |||| | | |||||||| | ||| | Sbjct 641139 TACTCTACCTTTGAGGGCTCTCCCGCCTCCG-AGGGCATTCTTCAGTTTGACATGTGGGA 641197 Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATG 364726 || | ||| |||| || ||| | ||| ||| || | | | | | ||| |||||| Sbjct 641198 CGTGAAGCCTTCTGACCTCTGGGAGTGGAATAGTCTGAAGGAGC-AGATCAAGGAGCATG 641256 Query 364727 GTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 | | ||||||||| || | || |||||||| ||||||||||| | ||||| || | Sbjct 641257 GAATTCGCAACTCACTGCTGCTCGCCCCCATGCCTACGGCTTCTACCTCTCAGATTCTAG 641316 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTC 364844 | ||||| ||||||||||| || ||||| | ||| |||| |||||| || || | Sbjct 641317 GTAACAATGAGTGCTTCGAGCC--TTACACGTCCAACATTTACCAACGCCGTGTCCTGGC 641374 Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904 || ||||| | ||| || || | || | || ||||| |||| || || || Sbjct 641375 AGGTGAATTCCAGGTTGTCAACCCCTGGCTGCTGAAAGATCTCGTCGACATGGGCCTTTG 641434 Query 364905 GGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG 364964 | ||| ||||||||| |||||| |||| || ||||| | ||||| || || Sbjct 641435 GTCTGATGCTATGAAGAACCGTATCATTGCCGAGAACGGTTCCATTCAGAATATCCCCAA 641494 Query 364965 ATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCT 365024 | || | || | || || | |||||||| || ||||||||||| ||| | Sbjct 641495 CATCCCGGCCGACATCAAAGCTCTCTACAAAACTGTTTGGGAAATTTCTCAACGACACGT 641554 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 | | | ||||| || || || |||||||| ||| ||| |||||| ||||| | Sbjct 641555 CGTGCAGATGGCTGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCA 641614 Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144 ||||| | || || | |||| | || |||||||| || ||| |||||| || Sbjct 641615 CATGAAGGATCCCACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGG 641674 Query 365145 TCTTAAGACAGG 365156 || ||||| || Sbjct 641675 CCTCAAGACGGG 641686 >seq103 Length=87482 Score = 93.3 bits (102), Expect = 1e-13 Identities = 341/524 (65%), Gaps = 20/524 (4%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCA--TTCGCGGAAC 22492 || |||||||||||||| | ||||| | |||| ||| | || ||||| | | Sbjct 35074 AAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAA--TCCAGCTTCGCCCAGC 35131 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | | |||| ||||||| || ||||| |||||||| || || ||| | | |||| Sbjct 35132 GCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCT 35191 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| || || |||| | ||||| ||||| || || || || || ||||| | Sbjct 35192 TCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGC 35251 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA-TCGGAATCATATCATTCA- 22670 | ||||||||||| || || || ||||| || |||| | || | | | || | Sbjct 35252 GTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCACTTGAAGCACCGAG 35311 Query 22671 TAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGT--TGAACTTGAACGT 22728 | | || |||| | | | ||||||||| |||| || | | ||| | Sbjct 35312 CCAGCAAGCAGATGA-----TCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAG- 35365 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788 ||| | ||||| || ||| ||| |||| || |||||| || |||| Sbjct 35366 -AGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGA-A 35423 Query 22789 ACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 ||| || ||| | ||||| || ||||| || | || | || ||| ||| ||| || Sbjct 35424 ACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAGGTGTA 35483 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 || | |||||| ||||| | ||||| || ||| | | || ||||| || || Sbjct 35484 CAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACTT 35543 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 |||||| ||| |||| ||||| ||||| || || ||||| |||| Sbjct 35544 CTTCGAGAAACGAGTGGGTGAGTACCAGAAGGCTGGTGTCATGG 35587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303307961037206