Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq36 98.7 9e-16 seq103 87.8 2e-12 >seq36 Length=230664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24001 TTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCG 24060 |||| || || || || ||||| | |||||| |||| || || | || || |||| Sbjct 21488 TTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCG 21429 Query 24061 AGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGA 24120 | | |||||| ||||||| ||||| |||||||| ||||| || || ||| | |||| Sbjct 21428 ACAATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGA 21369 Query 24121 TTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAG 24180 ||| || ||||| || | ||||| | | | | || |||||||||||| || || | Sbjct 21368 TTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGG 21309 Query 24181 AATCTACAATTCAT 24194 | || ||| ||||| Sbjct 21308 AGTCCACACTTCAT 21295 >seq103 Length=87482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCAT 104651 ||| || || |||||||| || || || || |||||||| ||| || || || | ||| Sbjct 35568 GTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTCTCCAT 35509 Query 104652 AAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711 || || |||||||| ||||| | || || | ||||| | | | ||| || Sbjct 35508 GAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGCAGGCG 35449 Query 104712 ATCCGCCACAAATTCGATGTACTCGCACATAGAATGTG-CATTCATGCCCAGCATTGCGA 104770 ||| || ||||| || ||||||| ||| |||||| |||||||||| || | || Sbjct 35448 ATCGGCTACAAACTCAATGTACTGTTTCATC-AATGTGGCATTCATGCCAAGTAGAGCAC 35390 Query 104771 CGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATG 104805 || ||||| | ||| | ||| |||||||||||| Sbjct 35389 ATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATG 35355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429921679503615