Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq4 210 2e-49
seq6 131 2e-25
seq36 118 1e-21
>seq4
Length=676188
Score = 210 bits (232), Expect = 2e-49
Identities = 926/1442 (64%), Gaps = 39/1442 (3%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| || || || |||| ||||| || || | ||| |||||| | ||
Sbjct 641395 TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGC 641336
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || |||| || || || || || |||| ||| | || || |||||| || | |
Sbjct 641335 TCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGC 641276
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| | ||| ||||| | || |||| |||||| | ||||| || || ||| |||||
Sbjct 641275 AGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTCCCAG 641216
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| || ||| |||||||||||||||| |||| | |||||||||| |||||| |
Sbjct 641215 AGGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGAGGCGGGAGAG 641156
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355
|| | ||||| | |||| | || | | ||||| | ||| | || || |
Sbjct 641155 CCCTCAAAGGTAGAGTAA--GGTCCTTGCTCCTTGGCCAATTCGACAGAGGCAGTGAGGG 641098
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415
| | || || ||||| || ||| |||||||| || ||| | |||
Sbjct 641097 CAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGACTCAA 641038
Query 145416 ACGGCATGCGCA--GCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473
| |||||||||| ||| | ||||| |||||||| ||||| | || || || || ||
Sbjct 641037 ATGGCATGCGCAAGGCA--AGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAATCGG 640980
Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAAT 145533
||| ||| ||||||||| ||| ||| || || || || | || || || ||
Sbjct 640979 CCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATGAT 640920
Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593
| | |||| ||| || || || |||| || | | | | ||| | ||||| | ||
Sbjct 640919 TCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG 640860
Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653
|||||| | | || || | | || | || ||||| || ||||| ||
Sbjct 640859 TCCCTCGTTGTAGTCTACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGAC 640800
Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713
||| || | | | ||| | || || || | ||| | ||| | ||| |||||
Sbjct 640799 CTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCC 640740
Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773
|| || | ||| || || ||||||||||| || ||||||||||||||| | || ||
Sbjct 640739 CAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAGGATTACC 640680
Query 145774 AGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAG---TCCTGCGCACGCACCTGCT- 145829
||||| ||| | ||||| ||| | || | || | ||| ||||| | || |
Sbjct 640679 CGTCTCTGTCTGGGCCTCCAGGATGGA---GTACCAGAGCTTCTGGGCACGAA--TGGTC 640625
Query 145830 GCTGGTAGC-GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888
|| | | |||||| || || || ||||| |||||||| | ||||||
Sbjct 640624 GCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAG 640565
Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948
|| || | ||||||||| || | |||||| |||||||| | ||| | ||||| | |
Sbjct 640564 CAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCG 640505
Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA 146008
||||||| ||| || | ||| || | ||| || || | || || || || | |
Sbjct 640504 ACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGC-ACGGAC 640446
Query 146009 TCCTCAGCACCCATGTTTCGCT-TCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACG 146066
| || || || ||| | ||||| ||| | ||| | | | || |||||||| |
Sbjct 640445 TTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGA-ACTCAAACACATCGGCGTGCCAAG 640387
Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTA 146123
| || | || | ||| | || || ||| |||||||||||||| || | |
Sbjct 640386 GCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGG 640327
Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACG--CCGTTCGTAGA 146181
|| ||||||| || || || | |||||| ||| || ||| ||| ||||| ||
Sbjct 640326 CCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGG--ACGTCCCGTTGGTGCC 640269
Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240
| || || ||| || ||| | || || ||||||| ||||| ||| || ||| |
Sbjct 640268 GGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCACCAGCCAT 640209
Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCT 146298
|||||| || ||||||| |||||| || |||||||| || ||||| || ||
Sbjct 640208 -CTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCT 640150
Query 146299 TCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCAT--CGGCGTCCCCGCCGAGAAC 146356
|| ||| ||| || ||||| || ||| || | ||| || || || || |||
Sbjct 640149 TC--ATGTCGACGAGGAAGCAAGACGACAGCT--GACATTGAGGTGTGCCAGCGTTGAAT 640094
Query 146357 AACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCG 146416
| || || ||||| || || | ||| | | ||| | | || ||||| | |
Sbjct 640093 AGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACT 640034
Query 146417 TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGC 146476
| ||| | ||| || || || | |||||| ||||| | |||||| ||||| |||
Sbjct 640033 CGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGC 639974
Query 146477 TC 146478
||
Sbjct 639973 TC 639972
>seq6
Length=626929
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| |||||||| || || | ||| |||||| || |||||||| ||| |
Sbjct 11348 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 11407
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| || |||| | ||||||||||| || |||
Sbjct 11408 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 11467
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| |||||| ||||| | || | || |||| ||||| |
Sbjct 11468 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 11527
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | || || || || || || || ||||||||||||||
Sbjct 11528 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 11574
>seq36
Length=230664
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||||||||| ||| || || | ||| |||||||| ||||||||||| ||
Sbjct 21043 GCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGC 21102
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || || ||||| ||||| || || ||| |||| | |||||||||||| |||||
Sbjct 21103 AAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 21162
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|| ||||||||||| ||| | | || ||| | | || | || || | || || |
Sbjct 21163 AATGCCTTCTTTGTC-TTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCA 21221
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || || || ||||| ||||||||
Sbjct 21222 CCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 116 bits (128), Expect = 3e-21
Identities = 165/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| || | || ||||| | ||| | || || ||||| || |||||||| ||
Sbjct 21561 GCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGC 21620
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| |||||| |||||| |||||||| || || | || | |||||| ||||| |||||
Sbjct 21621 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGG 21680
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||||| || ||||| || || ||||| | || | || || | |||||||
Sbjct 21681 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGAC 21740
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238
|| | || | ||| || ||||| || ||||| ||||||||||||||||||
Sbjct 21741 CTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATGACT 21792
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| || || | ||| | || |||||||| || ||||| |||||| | || || |
Sbjct 21284 CGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCG 21343
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| || | ||| ||||| ||| | || | |||||||||||| ||||| || ||||| |||
Sbjct 21344 TCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 21403
Query 131140 TCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
|| ||| | | || |||| | || | |||||| | || || | |||| |||||
Sbjct 21404 TC-TTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAAT 21462
Query 131199 GGTTTTACCGGTTAGAGTTTTTAC 131222
||| || ||||| | ||| || ||
Sbjct 21463 GGTCTTTCCGGTCAAAGTCTTGAC 21486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471996674862720
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