Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq6 105 5e-18
seq36 95.1 1e-14
>seq6
Length=626929
Score = 105 bits (116), Expect = 5e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| ||||| ||| |||||| || |||||||||||||||
Sbjct 11348 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 11407
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | || ||||| ||| | || || ||||| ||||| ||
Sbjct 11408 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 11467
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| |||| ||| || | | | | |||||| | ||||
Sbjct 11468 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 11527
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | |||||| || || || || || || ||||| ||||||||||| |||
Sbjct 11528 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTTG 11578
>seq36
Length=230664
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || || ||||| || ||||||||||| || | ||| | |||||
Sbjct 21577 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 21636
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || || || ||| |||| || ||||||||||| ||| | ||||| |||||
Sbjct 21637 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 21696
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | ||| || | | | | ||||| | ||| || | ||||||||
Sbjct 21697 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 21756
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||| || |||||||| |||||||||||
Sbjct 21757 TTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786
|||| |||| || |||||||| || ||||||||||| || | || | |||||
Sbjct 21062 ACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCA 21121
Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846
| ||||| || || | ||||| ||||| ||||| ||| | ||| |||||||| |
Sbjct 21122 AGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGA 21181
Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906
|| | |||||| | | | | ||||| | ||| || | ||||||||| |||
Sbjct 21182 ATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTT 21241
Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || || ||||| || ||||||||
Sbjct 21242 CCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/204 (70%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || ||||||||||| || ||||| || ||||| | || | ||||
Sbjct 21287 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCT 21346
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
||||| |||||||| || |||| || ||||| ||||| ||| | ||| || |||||
Sbjct 21347 TCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 21406
Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| |||| | || || | | | | ||| || | ||| || | ||| ||||
Sbjct 21407 TGAATCTTTGAT--TTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGG 21464
Query 16902 TTTTTCCGGTCAGCGTTTTGACAA 16925
| |||||||||| || |||||||
Sbjct 21465 TCTTTCCGGTCAAAGTCTTGACAA 21488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405074507151670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |