Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq4 185 1e-41
seq103 141 1e-28
>seq4
Length=676188
Score = 185 bits (204), Expect = 1e-41
Identities = 462/695 (66%), Gaps = 14/695 (2%)
Strand=Plus/Minus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| || || ||||| | || ||||||| | ||| || |||| | || || || |
Sbjct 640557 CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCT 640498
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| || ||||| |||||||||||||| | |||| ||| | | | ||| || |
Sbjct 640497 TCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCT 640438
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
| || ||||||| | ||| |||||| | | | ||| | ||||| || |||||||
Sbjct 640437 TGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGT 640378
Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257
| ||||| | | | ||||| || ||||| || ||||| || | ||||| || ||||| |
Sbjct 640377 AAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGT 640318
Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317
| |||| | | ||| ||||| | ||||||||| || || ||||| || | || |||
Sbjct 640317 TGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGG 640258
Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375
||| |||| ||||| | ||| | || || || || || ||||| || |||||
Sbjct 640257 AGCCAGTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGAT 640200
Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435
| ||||| || | ||| |||||||||||||| || || || ||| |||||| |
Sbjct 640199 CATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGAC 640140
Query 63436 TAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492
|| | ||| |||| | |||| || || || || || |||| || || ||
Sbjct 640139 GAGGA---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGA 640083
Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552
||||| || || ||| || | |||| ||| || || | || || ||||
Sbjct 640082 GGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATT 640023
Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612
| || || || ||||||||||| | ||||||||| |||| || || |||||
Sbjct 640022 GTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTT 639963
Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--T 63670
| ||| | || | | || || |||||||| || || ||||| || | || |
Sbjct 639962 GCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTT 639903
Query 63671 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705
|||| |||| || || | ||| | |||| |||
Sbjct 639902 GAAA--TCTCTGTCATAGACAATGGCGGAGTCGAG 639870
>seq103
Length=87482
Score = 141 bits (156), Expect = 1e-28
Identities = 297/441 (67%), Gaps = 10/441 (2%)
Strand=Plus/Minus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
|| ||||| |||||||| ||||| ||||| || || || || || | ||||| || ||
Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514
Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489
|||||||| || || ||||| | || || | || | | || | || || |
Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454
Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549
| | ||| || ||||| || || || |||||||| | |||||| || | ||
Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394
Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609
| ||| | |||| |||| ||||| |||| || || | ||| || ||||| |||||
Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334
Query 32610 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 32664
|||| | ||| || | ||||||| | | | | || || ||| || |
Sbjct 35333 TGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 35279
Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724
| || || ||| |||||||| || | |||||||||||||| || ||||| ||||
Sbjct 35278 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 35219
Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 32784
|||| | ||||||||| || ||||| || || || ||||| | || |||||||| |
Sbjct 35218 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 35159
Query 32785 CTTCTACTGCCGCAAAGGCAA 32805
|||| || || ||||| ||||
Sbjct 35158 CTTCCACGGCAGCAAAAGCAA 35138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633610353546800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |