Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq103 141 1e-28 >seq4 Length=676188 Score = 185 bits (204), Expect = 1e-41 Identities = 462/695 (66%), Gaps = 14/695 (2%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || || ||||| | || ||||||| | ||| || |||| | || || || | Sbjct 640557 CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCT 640498 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || ||||| |||||||||||||| | |||| ||| | | | ||| || | Sbjct 640497 TCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCT 640438 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||||| | ||| |||||| | | | ||| | ||||| || ||||||| Sbjct 640437 TGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGT 640378 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | | ||||| || ||||| || ||||| || | ||||| || ||||| | Sbjct 640377 AAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGT 640318 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | |||| | | ||| ||||| | ||||||||| || || ||||| || | || ||| Sbjct 640317 TGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGG 640258 Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| |||| ||||| | ||| | || || || || || ||||| || ||||| Sbjct 640257 AGCCAGTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGAT 640200 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | ||||| || | ||| |||||||||||||| || || || ||| |||||| | Sbjct 640199 CATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGAC 640140 Query 63436 TAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 || | ||| |||| | |||| || || || || || |||| || || || Sbjct 640139 GAGGA---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGA 640083 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 ||||| || || ||| || | |||| ||| || || | || || |||| Sbjct 640082 GGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATT 640023 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 | || || || ||||||||||| | ||||||||| |||| || || ||||| Sbjct 640022 GTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTT 639963 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--T 63670 | ||| | || | | || || |||||||| || || ||||| || | || | Sbjct 639962 GCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTT 639903 Query 63671 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 |||| |||| || || | ||| | |||| ||| Sbjct 639902 GAAA--TCTCTGTCATAGACAATGGCGGAGTCGAG 639870 >seq103 Length=87482 Score = 141 bits (156), Expect = 1e-28 Identities = 297/441 (67%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || ||||| |||||||| ||||| ||||| || || || || || | ||||| || || Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| || || ||||| | || || | || | | || | || || | Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| || ||||| || || || |||||||| | |||||| || | || Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||| | |||| |||| ||||| |||| || || | ||| || ||||| ||||| Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334 Query 32610 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 32664 |||| | ||| || | ||||||| | | | | || || ||| || | Sbjct 35333 TGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 35279 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 | || || ||| |||||||| || | |||||||||||||| || ||||| |||| Sbjct 35278 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 35219 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 32784 |||| | ||||||||| || ||||| || || || ||||| | || |||||||| | Sbjct 35218 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 35159 Query 32785 CTTCTACTGCCGCAAAGGCAA 32805 |||| || || ||||| |||| Sbjct 35158 CTTCCACGGCAGCAAAAGCAA 35138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633610353546800