Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq36 129 5e-25 >seq36 Length=230664 Score = 129 bits (142), Expect = 5e-25 Identities = 155/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 25006 TATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTA 25065 || |||| |||||||||||||| || |||| || |||| ||||| || ||||| |||| Sbjct 21491 TAGTTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTA 21432 Query 25066 TCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGC 25122 |||| || || || |||| | ||| ||||| ||||| ||||| |||||||| |||| Sbjct 21431 TCGA--CAATGTCAAATCAAAGATTCA-AGACAAGGAAGGCATTCCTCCTGACCAGCAGC 21375 Query 25123 GGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182 | | ||||| || |||||||| || ||||| | || || | | |||||| || || | Sbjct 21374 GTCTGATTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCC 21315 Query 25183 AAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || ||||| || ||| | || || Sbjct 21314 AGAAGGAGTCCACACTTCATCTTGTTCT 21287 Score = 100 bits (110), Expect = 2e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| | || || ||||| ||| Sbjct 21788 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 21729 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| || || ||||| |||||| Sbjct 21728 GACACCATCGA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGAC 21672 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| || || || | || || | ||||| | | || ||| Sbjct 21671 CAACAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTAC 21612 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || ||| | ||||| Sbjct 21611 AACATCCAGAAGGAATCAACTCTCCATCTTGTGCT 21577 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || ||||| || ||| Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| |||| | ||| ||||||||||| ||||| || ||||| Sbjct 21210 GACACAATAGACAACGTGAAGTCAAAGATTCAA-GACAAAGAAGGCATTCCTCCCGACCA 21152 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || ||||| ||||| | || |||| || || | | || ||||| Sbjct 21151 GCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAA 21092 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| || || || || | || || ||| Sbjct 21091 CATTCAGAAGGAGTCAACCTTGCACTTGGTG 21061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433313566521395