Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq36 129 5e-25
>seq36
Length=230664
Score = 129 bits (142), Expect = 5e-25
Identities = 155/208 (75%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 25006 TATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTA 25065
|| |||| |||||||||||||| || |||| || |||| ||||| || ||||| ||||
Sbjct 21491 TAGTTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTA 21432
Query 25066 TCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGC 25122
|||| || || || |||| | ||| ||||| ||||| ||||| |||||||| ||||
Sbjct 21431 TCGA--CAATGTCAAATCAAAGATTCA-AGACAAGGAAGGCATTCCTCCTGACCAGCAGC 21375
Query 25123 GGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182
| | ||||| || |||||||| || ||||| | || || | | |||||| || || |
Sbjct 21374 GTCTGATTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCC 21315
Query 25183 AAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || ||||| || ||| | || ||
Sbjct 21314 AGAAGGAGTCCACACTTCATCTTGTTCT 21287
Score = 100 bits (110), Expect = 2e-16
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | ||||| || ||||||| | || || ||||| |||
Sbjct 21788 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 21729
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || ||| | || | ||| ||||| || || ||||| ||||||
Sbjct 21728 GACACCATCGA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGAC 21672
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | |||||||| || || || | || || | ||||| | | || |||
Sbjct 21671 CAACAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTAC 21612
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || ||| | |||||
Sbjct 21611 AACATCCAGAAGGAATCAACTCTCCATCTTGTGCT 21577
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || ||||| || |||
Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || ||||| |||| | ||| ||||||||||| ||||| || |||||
Sbjct 21210 GACACAATAGACAACGTGAAGTCAAAGATTCAA-GACAAAGAAGGCATTCCTCCCGACCA 21152
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| |||| || ||||| ||||| | || |||| || || | | || |||||
Sbjct 21151 GCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAA 21092
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||||| || || || || | || || |||
Sbjct 21091 CATTCAGAAGGAGTCAACCTTGCACTTGGTG 21061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433313566521395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |