Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq103 132 5e-26 >seq103 Length=87482 Score = 132 bits (146), Expect = 5e-26 Identities = 202/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || |||||||| ||||| || |||| || |||| ||||||||| || ||| Sbjct 34955 ATGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGG 34896 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 |||||||| || || | ||| || | || || ||||| || | ||| || | Sbjct 34895 AATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAG 34836 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || || || || || ||||| || |||| || || || |||| | Sbjct 34835 TTCTCGTTGACAATGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATAT 34776 Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 |||||||| || || | | || | ||| ||| | |||||| || ||||||| ||| Sbjct 34775 TTCTCATCGTCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCT 34716 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || || || || ||||||||||| | ||| || Sbjct 34715 TCGGCCGTCCAGAAAGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 34669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 214/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| |||||||| || |||||||| |||||| |||||| || || ||| | || Sbjct 35448 ATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA-GCAC 35390 Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || | ||| || |||| || ||||||||||| || || ||| | | || | | Sbjct 35389 ATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATCTGTT 35330 Query 93045 TTACTCTACTATTTGGTGGTTTTTGTACGACA--TAATTGTACATTAAGCACGCAAAGTC 93102 | || || ||| ||| | || | || | | || || ||||| |||||||| Sbjct 35329 GGA-TCATCTGCTTGCTGGCTCG-GTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAAAGTC 35272 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 || || | ||| || || || || || || || ||| ||| || | ||| || | || Sbjct 35271 TGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCATCAA 35212 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || ||||| ||||| || || ||||||||| ||| || || ||||||||||| Sbjct 35211 GCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTTCCAC 35152 Query 93223 GGCTGCAAATGCCAC 93237 ||| ||||| || || Sbjct 35151 GGCAGCAAAAGCAAC 35137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556841776242920