Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq59 114 3e-20
>seq59
Length=154967
Score = 114 bits (126), Expect = 3e-20
Identities = 432/670 (64%), Gaps = 7/670 (1%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| ||||| |||| |||||||||||||||||||| || || |||||||||| ||
Sbjct 44748 GTCGGTTCCTTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGCTCAAA 44807
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|| ||||| || ||||| || || || ||||| || ||||| ||||||| | ||
Sbjct 44808 AAAGCAGATGTGCTTCTGCTGGACGAACCTACCAATCATCTGGACGTCACCAACATTGCT 44867
Query 279816 TGGCTAGTGTCCTACCTAACCAGTC-TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874
||||||| | ||||| | | || | || | | || | || ||||| |||||
Sbjct 44868 TGGCTAGAGAATTACCTCAAGACTCATCCAG-ACATCACTAGTTTGATCGTCTCCCACGA 44926
Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934
|| || ||||| ||| || | | | ||| ||||| || | || |||| |
Sbjct 44927 TTCCGGTTTCCTGGATAATGTCACCACGGATATCTACCACTACGAACCTAACAAGAAGTT 44986
Query 279935 CTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994
|| ||| ||||||||| |||||||||||| || ||||| || |||||
Sbjct 44987 GGCCTGCTACAAGGGCAACCTGGCTGCTTTCGTGGAGCTCCGGCCTGAAGCCAAGGCCTA 45046
Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054
|||| |||| | | ||| || | | | | || ||| || || |||| |||
Sbjct 45047 CTATACCCTGTCTGCCTCCAACGTCCAATTCAAGTTTCCTCCTCCCGGTATTCTTACGGG 45106
Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114
| ||| ||| | ||||| ||||| | | ||||||| | || |||||
Sbjct 45107 CGTCAAGTCACTGACCCGCGCCATCATTCGCATGAGCAATGTCTCCTACACCTACCCCAA 45166
Query 280115 TGGCCCCAA--CAT-CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGG 280171
| |||| ||| | | | |||| || ||| | || | || || | |
Sbjct 45167 AGCAACCAAGCCATCCCTGTCCGATGTCTCCTGCCAGCTGTCGCTCTCATCTCGTGTGGC 45226
Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231
||||||| ||||| |||||||| |||||||| || ||||| | || || ||||| |
Sbjct 45227 CATCATTGGTCCCAACGGTGCGGGCAAGTCTACGCTCATCAAGCTACTCACCGGCGA-AG 45285
Query 280232 CCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290
|| || | || | ||| |||||| || || |||| || | ||| | |
Sbjct 45286 TCATTCCCTCCACCGGCAAGGTTGAGAAGCACCCTAATCTGCGTATCGGCTACATTAAGC 45345
Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350
||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | ||||
Sbjct 45346 AGCACGCGCTAGAGCACGTGGAGATGCACCTTGAAAAGACACCCAACCAGTACCTCCAGT 45405
Query 280351 GGCGCTATGC 280360
|||| |||||
Sbjct 45406 GGCGGTATGC 45415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027800808688453
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |