Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq59 114 3e-20 >seq59 Length=154967 Score = 114 bits (126), Expect = 3e-20 Identities = 432/670 (64%), Gaps = 7/670 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||| |||| |||||||||||||||||||| || || |||||||||| || Sbjct 44748 GTCGGTTCCTTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGCTCAAA 44807 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||| || ||||| || || || ||||| || ||||| ||||||| | || Sbjct 44808 AAAGCAGATGTGCTTCTGCTGGACGAACCTACCAATCATCTGGACGTCACCAACATTGCT 44867 Query 279816 TGGCTAGTGTCCTACCTAACCAGTC-TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||||| | ||||| | | || | || | | || | || ||||| ||||| Sbjct 44868 TGGCTAGAGAATTACCTCAAGACTCATCCAG-ACATCACTAGTTTGATCGTCTCCCACGA 44926 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 || || ||||| ||| || | | | ||| ||||| || | || |||| | Sbjct 44927 TTCCGGTTTCCTGGATAATGTCACCACGGATATCTACCACTACGAACCTAACAAGAAGTT 44986 Query 279935 CTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 || ||| ||||||||| |||||||||||| || ||||| || ||||| Sbjct 44987 GGCCTGCTACAAGGGCAACCTGGCTGCTTTCGTGGAGCTCCGGCCTGAAGCCAAGGCCTA 45046 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 |||| |||| | | ||| || | | | | || ||| || || |||| ||| Sbjct 45047 CTATACCCTGTCTGCCTCCAACGTCCAATTCAAGTTTCCTCCTCCCGGTATTCTTACGGG 45106 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 | ||| ||| | ||||| ||||| | | ||||||| | || ||||| Sbjct 45107 CGTCAAGTCACTGACCCGCGCCATCATTCGCATGAGCAATGTCTCCTACACCTACCCCAA 45166 Query 280115 TGGCCCCAA--CAT-CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGG 280171 | |||| ||| | | | |||| || ||| | || | || || | | Sbjct 45167 AGCAACCAAGCCATCCCTGTCCGATGTCTCCTGCCAGCTGTCGCTCTCATCTCGTGTGGC 45226 Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 ||||||| ||||| |||||||| |||||||| || ||||| | || || ||||| | Sbjct 45227 CATCATTGGTCCCAACGGTGCGGGCAAGTCTACGCTCATCAAGCTACTCACCGGCGA-AG 45285 Query 280232 CCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || || | || | ||| |||||| || || |||| || | ||| | | Sbjct 45286 TCATTCCCTCCACCGGCAAGGTTGAGAAGCACCCTAATCTGCGTATCGGCTACATTAAGC 45345 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 ||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | |||| Sbjct 45346 AGCACGCGCTAGAGCACGTGGAGATGCACCTTGAAAAGACACCCAACCAGTACCTCCAGT 45405 Query 280351 GGCGCTATGC 280360 |||| ||||| Sbjct 45406 GGCGGTATGC 45415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027800808688453