Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq36 190 4e-43
seq6 167 4e-36
seq59 105 1e-17
seq5 98.7 2e-15
>seq36
Length=230664
Score = 190 bits (210), Expect = 4e-43
Identities = 171/215 (80%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306
||||| |||||||| | || ||||| || || ||||| || || | ||||||| |||
Sbjct 21056 CGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCA 21115
Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
|| || | ||| ||||||||||| || || | || |||||||| ||||||||||| |||
Sbjct 21116 TCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTG 21175
Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426
||||||||||||| ||| ||| || || ||||| | ||||| || || | |||||||
Sbjct 21176 TCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATG 21235
Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| ||||| ||||||||||||||||| ||||||||
Sbjct 21236 GTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | || || |||||||| || |||||||||||||||| |
Sbjct 21272 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 21331
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| ||||| || || ||||| || || | || ||||| || |||
Sbjct 21332 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 21391
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||||||||||||||||| ||||| ||||| || || | ||||| ||
Sbjct 21392 ATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACC 21451
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|| | ||| ||||| ||||| || | ||||||||
Sbjct 21452 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | || || || || || || |||||||| || || | |
Sbjct 21562 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 21621
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || || || | |||||||| || |||
Sbjct 21622 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 21681
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | |||||| ||||||||||| | ||| || ||
Sbjct 21682 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 21741
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || || ||||| |||||||| ||||||||
Sbjct 21742 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
>seq6
Length=626929
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || ||| ||| || |||||||| || ||||
Sbjct 11348 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 11407
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || ||||| || ||
Sbjct 11408 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 11467
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || || || | ||||||| ||||||||||| | || || ||
Sbjct 11468 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 11527
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || || ||||||||||||||||| ||||||||
Sbjct 11528 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 11574
>seq59
Length=154967
Score = 105 bits (116), Expect = 1e-17
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033
||||||||||||||||| |||||||||||| ||| | || ||||| |||| | || |
Sbjct 45416 GGCATACCGCCACTGGAGGTACTGGTTGGGTGTCTTTTCAAGGTGCATCTCCACGTGCTC 45357
Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093
| || ||||| | ||| | || |||| || || |||||| || ||| |
Sbjct 45356 TAGCGCGTGCTGCTTAATGTAGCCGATACGCAGATTAGGGTGCTTCTCAACCTTGCCG-G 45298
Query 225094 AGTCGGTTGTGCCT-CGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152
| || || || |||||||||| | |||||||||||||| |||||||||||| ||||
Sbjct 45297 TGGAGGGAATGACTTCGCCGGTGAGTAGCTTGATGAGCGTAGACTTGCCCGCACCGTTGG 45238
Query 225153 GGCCAATCACGCCAATCCGGGATGA 225177
| ||||| | | | | || |||||
Sbjct 45237 GACCAATGATGGCCACACGAGATGA 45213
Score = 93.3 bits (102), Expect = 8e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574
||||| || | |||| ||||||||| || || |||||||||||||| || || | ||
Sbjct 44872 AGCCAAGCAATGTTGGTGACGTCCAGATGATTGGTAGGTTCGTCCAGCAGAAGCACATCT 44813
Query 225575 GCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAG 225634
|| | |||| |||||||| | |||| |||||||| ||||| || ||||||| |||
Sbjct 44812 GCTTTTTTGAGCATGGCGCGAGCCAGAGCAAGCTTCATCTTCCAACCACCGGACAAGGAA 44753
Query 225635 CCGA 225638
||||
Sbjct 44752 CCGA 44749
>seq5
Length=634825
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| ||||| || || || | || || | ||||| || | |||||| || || || ||
Sbjct 42355 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 42414
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || ||||| || ||||| || ||||| || || ||||| | ||||| |||
Sbjct 42415 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 42474
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| | || || || || | ||||||||| || ||||| | ||||||||||||
Sbjct 42475 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 42533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921590915074760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |