Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4 271 1e-67
seq103 134 3e-26
>seq4
Length=676188
Score = 271 bits (300), Expect = 1e-67
Identities = 889/1359 (65%), Gaps = 43/1359 (3%)
Strand=Plus/Minus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| || || || | ||| || ||||| ||||| | |||| || ||
Sbjct 641396 GTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGG 641337
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||||| || ||| |||| || || ||||| | || || || |||||||| | |
Sbjct 641336 CTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAG 641277
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267
|||||| ||| | | || ||| || ||| || || || || ||||| |||
Sbjct 641276 CAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGA-CTA-TTCCACTCC 641219
Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327
|| | | | || ||| | || ||| |||||||||||||||| || | |||| |
Sbjct 641218 CAGAGGTCAGA-AGG-CTTCACGT-------CCCACATGTCAAACTGAAGAATGCCCTCG 641168
Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386
| |||| |||||| |||| | ||| || || | || ||||| | ||||
Sbjct 641167 GAGGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG 641108
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446
|| |||||| || | |||||||||||| || ||| |||||| | || |||||||
Sbjct 641107 GCAGT-GAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTC 641049
Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506
| | || || |||| || | ||| ||||||| || ||||| ||||| |
Sbjct 641048 AGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAAC 640989
Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566
|| || || | ||||||| ||||| | | ||| || | |||||||| |||| |
Sbjct 640988 ACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGAC 640929
Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626
|| || | |||| |||||||| | | || ||| ||| ||| ||| ||
Sbjct 640928 ATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAA 640869
Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686
|||||| ||| ||||| | | || || || || | || || |
Sbjct 640868 GTCGTAG-CGTC-----CCTCGTTG-TAGT----CT-ACGAAGGCAGGCAGAGCCAGAGA 640821
Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746
||||| |||||| || || ||||| || | | | ||||| |||||| || ||||| ||
Sbjct 640820 GGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAG 640761
Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806
||| || ||| || |||| || || || ||| ||| ||||||||| |||||
Sbjct 640760 GTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 640701
Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866
|||||||||||| || || ||||| |||||| | |||| | || |||||| |
Sbjct 640700 GTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTT 640641
Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926
| || | ||| ||| |||||||||| ||| || || || |||||
Sbjct 640640 CTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 640581
Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTC 244984
||||| ||| || || | ||||||||||| || | |||||||| ||| ||
Sbjct 640580 AAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTG--GGGCACATCAGAGTC 640523
Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044
|| || ||| | || ||| | || |||||| || ||||| ||||| || || ||||
Sbjct 640522 CAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAAT 640463
Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAA 245103
| || | | | || ||| ||| ||| ||||| | || || | || |||||
Sbjct 640462 AAATCACGAGCACGGACTTCTTCCTTGCC-GTGATTCTTTCGCAAATCAAGGAACTCAAA 640404
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
|| ||| ||||||| ||||||| ||| | || | ||||| || ||||||||||| ||
Sbjct 640403 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 640344
Query 245164 CTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222
|||||| || ||| || | |||||| | || || | || | | || || |
Sbjct 640343 CTGGTCGACATATCTGGCCGTG-TTGTTGAAAACACGAAGCATGGGAATGACACCATTGG 640285
Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT-- 245280
| ||||||||||| ||||||| ||| || | | | ||| | |||||||
Sbjct 640284 ACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC---GCGAATGC-GGTGGACATTC 640229
Query 245281 --GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338
||| | || || || ||||||||| | ||||||| |||||| ||||| |||
Sbjct 640228 AAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATG 640169
Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
||||| ||||||||| |||||||| || || ||||| || |||||||| | ||
Sbjct 640168 CCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGT 640109
Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
||| | |||||| || ||||| |||||| || |||
Sbjct 640108 GTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAG 640070
>seq103
Length=87482
Score = 134 bits (148), Expect = 3e-26
Identities = 311/458 (68%), Gaps = 13/458 (3%)
Strand=Plus/Plus
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|||| | || | |||| || ||| | ||||| || || || |||||| || || ||
Sbjct 35122 TTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTT 35181
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812
|| || ||||||||||| ||| || | | ||||||||| ||||||||||| ||||||
Sbjct 35182 GCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAA 35241
Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872
| ||| | || ||||| ||||| | |||||||||||| | ||| ||| |||
Sbjct 35242 TTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCAC 35298
Query 42873 CTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| | ||| | |||| | ||| || | ||| || || || || || || ||
Sbjct 35299 TTGAAGCACCGAGCCAGC-AAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCAT 35357
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAA--CCACGA 42988
|||||| ||||| || || || | |||| ||| | || | |||||||| ||||
Sbjct 35358 CGAGAAAGAGTTTCTGACTGAGGCTTTGCCATGTG-CTCTACTTGGCATGAATGCCAC-- 35414
Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCTCA 43047
| ||| ||||||| ||| || ||||| | || | ||| | ||| | |
Sbjct 35415 ATTGATGAAACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGA 35474
Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107
| | | ||||| ||| | || || ||||| |||||||||||||| |||| ||||
Sbjct 35475 GAAG-GTGTACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCA 35533
Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||| ||||| |||||||| || || | || ||||||
Sbjct 35534 AGACAAACTTCTTCGAGAAACGAGTGGGTGAGTACCAG 35571
Score = 86.0 bits (94), Expect = 1e-11
Identities = 177/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||| ||||| || || |||||| ||||| ||||| || |||
Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728
Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACT-GTCTGA--GA--ACGAAAAGTTTTTCCTCA 42414
| || || | || |||| | || | |||||| || | || || | |||| ||
Sbjct 34729 TCGAAAGATTTGCACGACTGGAA--CAATCGTCTGAATGACGATGAGAAATATTTCATCT 34786
Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474
|||| ||||| ||||| || |||||||||||||| ||||| |||||| |||
Sbjct 34787 CCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGC 34846
Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534
| |||| || || || | |||||| || ||||| ||||| |||||||| |
Sbjct 34847 GCTTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 34906
Query 42535 TAGAGAACGTGCACTCTGA 42553
| ||||| | ||||| ||
Sbjct 34907 TGGAGAATATCCACTCGGA 34925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944306939012080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |