Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 271 1e-67 seq103 134 3e-26 >seq4 Length=676188 Score = 271 bits (300), Expect = 1e-67 Identities = 889/1359 (65%), Gaps = 43/1359 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| || || || | ||| || ||||| ||||| | |||| || || Sbjct 641396 GTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGG 641337 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||| || || ||||| | || || || |||||||| | | Sbjct 641336 CTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAG 641277 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267 |||||| ||| | | || ||| || ||| || || || || ||||| ||| Sbjct 641276 CAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGA-CTA-TTCCACTCC 641219 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | | | || ||| | || ||| |||||||||||||||| || | |||| | Sbjct 641218 CAGAGGTCAGA-AGG-CTTCACGT-------CCCACATGTCAAACTGAAGAATGCCCTCG 641168 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386 | |||| |||||| |||| | ||| || || | || ||||| | |||| Sbjct 641167 GAGGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG 641108 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || |||||| || | |||||||||||| || ||| |||||| | || ||||||| Sbjct 641107 GCAGT-GAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTC 641049 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | || || |||| || | ||| ||||||| || ||||| ||||| | Sbjct 641048 AGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAAC 640989 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || || || | ||||||| ||||| | | ||| || | |||||||| |||| | Sbjct 640988 ACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGAC 640929 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 || || | |||| |||||||| | | || ||| ||| ||| ||| || Sbjct 640928 ATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAA 640869 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||||| ||| ||||| | | || || || || | || || | Sbjct 640868 GTCGTAG-CGTC-----CCTCGTTG-TAGT----CT-ACGAAGGCAGGCAGAGCCAGAGA 640821 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| |||||| || || ||||| || | | | ||||| |||||| || ||||| || Sbjct 640820 GGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAG 640761 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || ||| || |||| || || || ||| ||| ||||||||| ||||| Sbjct 640760 GTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 640701 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 |||||||||||| || || ||||| |||||| | |||| | || |||||| | Sbjct 640700 GTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTT 640641 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | || | ||| ||| |||||||||| ||| || || || ||||| Sbjct 640640 CTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 640581 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTC 244984 ||||| ||| || || | ||||||||||| || | |||||||| ||| || Sbjct 640580 AAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTG--GGGCACATCAGAGTC 640523 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || ||| | || ||| | || |||||| || ||||| ||||| || || |||| Sbjct 640522 CAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAAT 640463 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | || | | | || ||| ||| ||| ||||| | || || | || ||||| Sbjct 640462 AAATCACGAGCACGGACTTCTTCCTTGCC-GTGATTCTTTCGCAAATCAAGGAACTCAAA 640404 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 || ||| ||||||| ||||||| ||| | || | ||||| || ||||||||||| || Sbjct 640403 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 640344 Query 245164 CTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 |||||| || ||| || | |||||| | || || | || | | || || | Sbjct 640343 CTGGTCGACATATCTGGCCGTG-TTGTTGAAAACACGAAGCATGGGAATGACACCATTGG 640285 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT-- 245280 | ||||||||||| ||||||| ||| || | | | ||| | ||||||| Sbjct 640284 ACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC---GCGAATGC-GGTGGACATTC 640229 Query 245281 --GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 ||| | || || || ||||||||| | ||||||| |||||| ||||| ||| Sbjct 640228 AAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATG 640169 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 ||||| ||||||||| |||||||| || || ||||| || |||||||| | || Sbjct 640168 CCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGT 640109 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| | |||||| || ||||| |||||| || ||| Sbjct 640108 GTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAG 640070 >seq103 Length=87482 Score = 134 bits (148), Expect = 3e-26 Identities = 311/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| | || | |||| || ||| | ||||| || || || |||||| || || || Sbjct 35122 TTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTT 35181 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 || || ||||||||||| ||| || | | ||||||||| ||||||||||| |||||| Sbjct 35182 GCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAA 35241 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 | ||| | || ||||| ||||| | |||||||||||| | ||| ||| ||| Sbjct 35242 TTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCAC 35298 Query 42873 CTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | | ||| | |||| | ||| || | ||| || || || || || || || Sbjct 35299 TTGAAGCACCGAGCCAGC-AAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCAT 35357 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAA--CCACGA 42988 |||||| ||||| || || || | |||| ||| | || | |||||||| |||| Sbjct 35358 CGAGAAAGAGTTTCTGACTGAGGCTTTGCCATGTG-CTCTACTTGGCATGAATGCCAC-- 35414 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCTCA 43047 | ||| ||||||| ||| || ||||| | || | ||| | ||| | | Sbjct 35415 ATTGATGAAACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGA 35474 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | | | ||||| ||| | || || ||||| |||||||||||||| |||| |||| Sbjct 35475 GAAG-GTGTACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCA 35533 Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| ||||| |||||||| || || | || |||||| Sbjct 35534 AGACAAACTTCTTCGAGAAACGAGTGGGTGAGTACCAG 35571 Score = 86.0 bits (94), Expect = 1e-11 Identities = 177/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || || |||||| ||||| ||||| || ||| Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACT-GTCTGA--GA--ACGAAAAGTTTTTCCTCA 42414 | || || | || |||| | || | |||||| || | || || | |||| || Sbjct 34729 TCGAAAGATTTGCACGACTGGAA--CAATCGTCTGAATGACGATGAGAAATATTTCATCT 34786 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| ||||| ||||| || |||||||||||||| ||||| |||||| ||| Sbjct 34787 CCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGC 34846 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| || || || | |||||| || ||||| ||||| |||||||| | Sbjct 34847 GCTTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 34906 Query 42535 TAGAGAACGTGCACTCTGA 42553 | ||||| | ||||| || Sbjct 34907 TGGAGAATATCCACTCGGA 34925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944306939012080