Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq112 82.4 7e-11 >seq112 Length=75797 Score = 82.4 bits (90), Expect = 7e-11 Identities = 187/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 20377 GTGACAGGGCGGAAGCGCCATCAACGACA-AGTCCGCCGG-GTTCCACGCACACATAATG 20434 ||||||||| || || ||||| | || || | | || |||||| || | ||||||| Sbjct 40765 GTGACAGGGAGGCAGGGCCATGA--GATGTAGATCTCGGGCGTTCCAAGCGCTCATAATG 40708 Query 20435 ATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAAC 20494 || | || |||| ||| || || || ||| || | | || | | ||||| | Sbjct 40707 ATGCGCCTGTCGTACGGCTTGTTCTTGATTTTGTCTATCACGTCGGCGAGCTGGTCGACT 40648 Query 20495 CCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGG 20554 |||| ||| | ||||| | | ||||| || || | || |||||||| | ||| ||| Sbjct 40647 CCCTTGCCGGCGTAGTCGGTCTTGGCGTCGACATATTCTGCGCCAAAGTGGCGCCATTGG 40588 Query 20555 AAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGG 20614 || ||||| || || |||| || || || | ||||| ||||| | | | | ||| Sbjct 40587 AAGCCGTACACGGGACCCAGGTCGCCTACCTCGCGGTGCGTGAGGCCCAGGCTGTCGAGG 40528 Query 20615 AACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 ||||| | || || || |||||||||||||| || Sbjct 40527 AACTCGCGCGATCCGTTGCCATCCCATATCTTGACGCC 40490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441357721601720