Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq36 140 8e-28 seq6 127 5e-24 >seq36 Length=230664 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||||| ||| || || ||||| ||||| |||||| Sbjct 21272 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 21331 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| || ||||| || ||||| ||||||||||| || | || Sbjct 21332 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 21391 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | ||| || || || |||| ||| ||||| || Sbjct 21392 ATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACC 21451 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| || || ||||| ||||||| ||||||||| Sbjct 21452 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || ||||| | || ||| || ||||| || |||| Sbjct 21558 CATG-CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGT 21616 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||| ||||| ||||| || | || ||||| || || |||||||||||||| | Sbjct 21617 CTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAG 21676 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || ||||| || || ||||| || || | || || || || || | || || | Sbjct 21677 GAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACT 21736 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| ||||| || || |||||||| |||||||| Sbjct 21737 CGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || || ||||| || || | ||||| || |||||| Sbjct 21080 TCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAG 21139 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || || || |||||||| || || || || | |||||||| Sbjct 21140 ATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTG 21199 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | || ||||| || || || ||||| ||||| || || || ||||||||| Sbjct 21200 TCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 21259 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 21260 AAGATCTGCAT 21270 >seq6 Length=626929 Score = 127 bits (140), Expect = 5e-24 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || |||||||| || ||||| || || || | || || || Sbjct 11378 GTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 11437 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || ||||| || |||||| || || || || ||||||||||| | Sbjct 11438 GCAAAGATGAGTCGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGAC 11494 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| || || || ||||| |||||||||||||| || || Sbjct 11495 TTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGG 11554 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| Sbjct 11555 GTCTTGACGAAAATCTGCAT 11574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179613092557974