Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq36 140 8e-28
seq6 127 5e-24
>seq36
Length=230664
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | || || ||||||| ||| || || ||||| ||||| ||||||
Sbjct 21272 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 21331
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || |||||||| || ||||| || ||||| ||||||||||| || | ||
Sbjct 21332 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 21391
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || || || || || | ||| || || || |||| ||| ||||| ||
Sbjct 21392 ATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACC 21451
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||||| || || ||||| ||||||| |||||||||
Sbjct 21452 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486
Score = 122 bits (134), Expect = 2e-22
Identities = 167/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | || || ||||| | || ||| || ||||| || ||||
Sbjct 21558 CATG-CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGT 21616
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| ||||| ||||| ||||| || | || ||||| || || |||||||||||||| |
Sbjct 21617 CTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAG 21676
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| ||||| || || ||||| || || | || || || || || | || || |
Sbjct 21677 GAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACT 21736
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| ||||| || || |||||||| ||||||||
Sbjct 21737 CGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||| || || || ||||| || || | ||||| || ||||||
Sbjct 21080 TCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAG 21139
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || || || |||||||| || || || || | ||||||||
Sbjct 21140 ATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTG 21199
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
||||| | || ||||| || || || ||||| ||||| || || || |||||||||
Sbjct 21200 TCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 21259
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 21260 AAGATCTGCAT 21270
>seq6
Length=626929
Score = 127 bits (140), Expect = 5e-24
Identities = 149/200 (75%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
||||| || || ||||| || |||||||| || ||||| || || || | || || ||
Sbjct 11378 GTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 11437
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||| || ||||| || |||||| || || || || ||||||||||| |
Sbjct 11438 GCAAAGATGAGTCGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGAC 11494
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| ||||| || || | ||| || || || ||||| |||||||||||||| || ||
Sbjct 11495 TTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGG 11554
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||||||||| ||||||||
Sbjct 11555 GTCTTGACGAAAATCTGCAT 11574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179613092557974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |