Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq36 143 3e-29
seq5 96.9 3e-15
seq6 84.2 2e-11
>seq36
Length=230664
Score = 143 bits (158), Expect = 3e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || ||||| || || |||||||| ||||||| |||||| ||||
Sbjct 21577 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 21636
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||| || ||| |||| || ||||| ||||| ||||||||||| || || ||
Sbjct 21637 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 21696
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || ||| | || || || | ||| | ||||
Sbjct 21697 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 21756
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||| | ||||| |||||||| |||||
Sbjct 21757 TTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | || || ||||||| || || || || || ||||| ||||| ||
Sbjct 21271 ACCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGC 21330
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| || || ||||||| | ||| ||||| || |||| || ||||||||||| |||||
Sbjct 21331 GAGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGG 21390
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| ||||| || ||||| || ||| || ||| || | |||||| | |||||
Sbjct 21391 AATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCAC 21450
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431
|| | || | |||||| ||||||||||| || ||
Sbjct 21451 CTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || ||||||||||| ||||| | || || | || |||||||| || |||
Sbjct 21074 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 21133
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || || |||||||||||||||||||| |||||||| ||||| || ||| |||
Sbjct 21134 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 21193
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | ||| ||| | ||||| || | || | |||||| || || | ||
Sbjct 21194 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 21253
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 21254 TTGACGAAGATCTGCAT 21270
>seq5
Length=634825
Score = 96.9 bits (106), Expect = 3e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315
|| || || ||||| ||||| | ||| || | || |||||||||||||| ||| | ||
Sbjct 42355 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 42414
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375
| ||||||||||| || ||||| || || || || ||||| || || ||| ||
Sbjct 42415 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 42474
Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
| ||| ||| || || || |||| || | |||||| || ||||| || || ||||||
Sbjct 42475 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAA 42534
Query 64436 ATT 64438
||
Sbjct 42535 CTT 42537
>seq6
Length=626929
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|| || || |||||||| || || | |||||| | || || ||||||||||| ||| |
Sbjct 11384 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 11443
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
||||| ||||||||||| || || || || || || || || ||||| ||| ||
Sbjct 11444 ATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTG 11503
Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432
|| | || || | ||||| || | || | ||||| || || | || || |||
Sbjct 11504 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACG 11563
Query 64433 AAAATTTGCATTTT 64446
||||| ||||| ||
Sbjct 11564 AAAATCTGCATCTT 11577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499627730884520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |