Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq36 122 9e-23
seq6 104 2e-17
>seq36
Length=230664
Score = 122 bits (134), Expect = 9e-23
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || ||||||||||| || || || | | |||||||||| ||||||||||||||
Sbjct 21043 GCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGC 21102
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||||| || ||||| |||| |||| |||||||| ||||| |||||
Sbjct 21103 AAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 21162
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| ||||||||||| ||| | |||| || | ||| || | ||||| | || |||
Sbjct 21163 AATGCCTTCTTTGTC-TTGAATCTTTGACTTCACGTTG-TCTATTGTGTCAGAAGATTCC 21220
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| | || | || || || || || || || || || ||||||||
Sbjct 21221 ACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/202 (71%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||| ||||| || ||||||||||| | || || |||||| || || || || |
Sbjct 21593 TTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAG 21652
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536
| | || |||||||||||||| ||||| || || || ||||| ||| | || | ||
Sbjct 21653 CAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTG 21711
Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
|||| || | |||||| | ||||| ||||| | || | || || || || || ||
Sbjct 21712 ACATTG-TCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGT 21770
Query 138597 TTTTACAAAAATCTGCATGGCT 138618
||| || |||||||||||| ||
Sbjct 21771 TTTGACGAAAATCTGCATGACT 21792
>seq6
Length=626929
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| || || || |||||||| || || || | | |
Sbjct 11383 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 11442
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| ||||| || || || || || ||||| |||||| || | |
Sbjct 11443 GATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTT 11502
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||||| || | ||| || || || || || || ||
Sbjct 11503 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGAC 11562
Query 138603 AAAAATCTGCAT 138614
|||||||||||
Sbjct 11563 GAAAATCTGCAT 11574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496245446435760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |