Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 237 2e-57 >seq4 Length=676188 Score = 237 bits (262), Expect = 2e-57 Identities = 1123/1756 (64%), Gaps = 75/1756 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| ||||||||||| ||| | |||||| | | ||||| || | | ||| Sbjct 641696 GTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTT 641637 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || ||| | |||| | ||| | | ||||| || |||||||| || Sbjct 641636 GCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACC 641577 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAG 115740 || || || ||||| | | || | || | || ||||||| |||||| ||||| Sbjct 641576 ACGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAG 641519 Query 115741 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACC 115800 || || || || | ||||| | |||||| || || || ||| || | | Sbjct 641518 AGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGA---ACCGTTCTCGGCA 641462 Query 115801 ATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----C 115853 |||| | | ||||||| | | ||||| || || || | |||||| | || | Sbjct 641461 ATGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGC 641402 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 ||| | |||||||| || ||||| || ||| || | | || ||||||| Sbjct 641401 CAGGGG----TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGA 641346 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 |||||| ||||| ||||||||||||||||| | || || | || || || || ||||| Sbjct 641345 CGTGTAAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCAT 641286 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 ||| || | || || |||||| | || | || | || | ||||| || | Sbjct 641285 GGGGGCGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATT 641226 Query 116034 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093 ||| || || | | || | | |||||||| |||||||| || || || | ||| Sbjct 641225 CCACTCCCAGAGGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGA 641166 Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCT 116150 || || || |||||||| || || || || | ||| ||||||||| ||| Sbjct 641165 GGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG-- 641108 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 116210 || |||||| || || || || |||||||| || | || | | |||||| Sbjct 641107 -GCAGTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTC 641049 Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270 ||| ||||| | | || | || || | || |||||||| ||||| || | Sbjct 641048 AGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAAC 640989 Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 116330 ||||| || || |||| ||| || || || || || ||||| || || Sbjct 640988 ACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGAC 640929 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 ||| || | || || || || || |||| |||| || || ||||| | | | Sbjct 640928 ATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAA 640869 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAGAT 116446 || | ||| ||| | | | | ||| ||| ||| || | || |||| | Sbjct 640868 GTCGTA---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGT 640813 Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 116506 | || |||| | |||||| ||| |||||| | ||||||||| || | || || | Sbjct 640812 TGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGC 640753 Query 116507 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCA 116566 | || || ||||||||||| || || ||| |||| || |||||||||||||||| Sbjct 640752 TGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCA 640693 Query 116567 TATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCT 116625 | | || | |||||||| || |||| || || || | | ||| | | || | Sbjct 640692 TGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG----- 640638 Query 116626 GGCAC-AGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTC 116678 ||||| | ||| | || || |||| |||| ||| |||||| ||||| ||||| Sbjct 640637 GGCACGAATGG---TCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 640581 Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGAC 116736 |||||| || || ||| || | || || || || || | || || | |||| | Sbjct 640580 AAACTCCTC-GCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTC 640523 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | ||| || ||| || ||||||||||| || || || ||||| || || ||| Sbjct 640522 CAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAAT 640463 Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856 | ||| ||| || ||||||| | || ||||| ||||| || | || || | Sbjct 640462 AAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAAC 640403 Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC--GACGACCAGC 116912 | ||| |||||||| || |||| ||| | || | | || | || | | ||| | Sbjct 640402 ACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTG-CCACC 640344 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 ||||| ||||| || ||||| ||| || || |||||||| ||||||| ||||| || Sbjct 640343 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 640284 Query 116973 TTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030 || || || || || || ||| | |||| | | ||||| | || Sbjct 640283 CGTCCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCGCGAATGCGGTGGACATTCAAG 640226 Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || ||||| || ||| ||| ||||| ||||| | |||| || | ||||| || Sbjct 640225 CCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCC 640166 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT--GGTG 117148 ||||| ||| |||| | ||| ||||||||| ||||| || | || |||| Sbjct 640165 TCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACA--GCTGACATTGAGGTG 640108 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA--TACCTTGGGACATCTTATC 117206 | ||||||||||| || || |||| ||||| |||| | | || |||||| || Sbjct 640107 TGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATG 640050 Query 117207 GTAGGTCTCCAAGACAGAGGGAA---TGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 |||||| |||| ||| || ||||| ||| | || |||| | ||| ||||| Sbjct 640049 GTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAG---ATCCCGACAGCGACACGCAT 639993 Query 117264 AAACATGTATTGGGGT 117279 || ||||| |||||| Sbjct 639992 AATCATGTGCTGGGGT 639977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613486241060280