Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 seq103 109 9e-19 seq112 86.0 1e-11 >seq4 Length=676188 Score = 125 bits (138), Expect = 1e-23 Identities = 381/576 (66%), Gaps = 12/576 (2%) Strand=Plus/Minus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACATGCC 203898 |||||| |||||||| || | || | ||||| || ||| | | || ||||||||||| Sbjct 641741 GTCCACGGTGAACTGGATAG-GTGC--GGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 641685 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| |||||| | ||| ||| | ||||||||||| | |||| || |||| Sbjct 641684 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 641625 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 || |||||||||||| ||||||||| ||||||||||||| | || || || || Sbjct 641624 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 641565 Query 204019 CATATTGATAATG-GTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 ||| | | | | ||| | || ||||| ||||| || || ||| | | || || ||| Sbjct 641564 CATCTGCACGACGTGTCGT-TGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 641506 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 || | | | | | ||| || || ||||| ||||| || | | || || Sbjct 641505 CGGCCGGGATGT-TGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTC 641447 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | || ||| | ||||| || || || || ||| |||||||| | | Sbjct 641446 ATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACC 641387 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || || | ||| || | || | | | |||| ||| | || ||||| | Sbjct 641386 TGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCAC 641327 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 || ||||| || | |||||||| ||| ||||| |||||||| || || ||||| ||| Sbjct 641326 TCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAG 641267 Query 204317 TTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| | || | | | || |||| ||||||| |||| || | || Sbjct 641266 TTGCGAATTCCATGCTCCTTGA-TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAGA 641208 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || |||||| |||||||||| ||||||| ||||| Sbjct 641207 AGGCTTCACGTCCCACATGTCAAACTGAAGAATGCC 641172 Score = 96.9 bits (106), Expect = 6e-15 Identities = 355/543 (65%), Gaps = 16/543 (3%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 ||| || ||| || || ||| |||| || ||||| ||| ||| || || || Sbjct 640604 CTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCA 640545 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAG 205176 || ||||| |||||||||| ||| ||| | ||| ||| || | || ||| || || Sbjct 640544 TTCGTTGGGGCACATCAGAGTCCA-ATC--ACCGTTCTTCTCGACGCGCTTCATGAAAAG 640488 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236 ||| ||||| || | || | |||||| || | | | | || | || | || Sbjct 640487 ATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATT 640428 Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 |||| ||| || || | | | ||||||||||| ||||| || | | ||| | Sbjct 640427 CTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAA 640368 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 ||||| || | |||||| ||||||||||| || | | | | ||||||||| || Sbjct 640367 AGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACG 640308 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGC 205416 ||||| || | | ||| |||| |||||||| |||| | ||| ||||| || Sbjct 640307 AAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC 640248 Query 205417 CCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA- 205473 | | || |||| || | ||| || || |||| ||||| |||| |||||| Sbjct 640247 GCGAATGCGGTGGACAT--TCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAG 640190 Query 205474 CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGC 205532 ||||| || ||| |||||||| ||||| || ||| || |||| || || ||| Sbjct 640189 GTCTTG-AGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCA-TGTCGACGAGGAAGC 640132 Query 205533 ACGAAGCCAGCTTGGCAAAGTTG-GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 | || | |||| || || | | ||||| |||| ||| || ||||| |||||| || Sbjct 640131 AAGACGACAGC-TGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTG 640073 Query 205592 AAG 205594 ||| Sbjct 640072 AAG 640070 >seq103 Length=87482 Score = 109 bits (120), Expect = 9e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| | ||| |||||||| |||||| ||||| || || ||||| || |||||||| | Sbjct 35289 CAGCAAGCAGGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAA 35230 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | |||| || ||||| | |||||| || ||||| || || | |||||||||||||| Sbjct 35229 GGTGAGACCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCT 35170 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || || || || |||||||| ||||| || || Sbjct 35169 GAAGAAAATACCTTCCACGGCAGCAAAAGCAAC 35137 >seq112 Length=75797 Score = 86.0 bits (94), Expect = 1e-11 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 116097 TGTCTGTTTTACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAG 116155 |||| || |||||| |||| ||| |||||||| |||||||| ||||| ||| ||||||| Sbjct 40886 TGTCAATTATACCAACGATCCTGC-GACATGGGATTGGGCGTGCCCTTCAACATTGCGAG 40944 Query 116156 CTACGCGCTACTGACTCATATTATGGCACAT 116186 ||||||||| || || || || || |||||| Sbjct 40945 CTACGCGCTCCTCACCCACATGATCGCACAT 40975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795128035510480