Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 1e-23
seq103 109 9e-19
seq112 86.0 1e-11
>seq4
Length=676188
Score = 125 bits (138), Expect = 1e-23
Identities = 381/576 (66%), Gaps = 12/576 (2%)
Strand=Plus/Minus
Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACATGCC 203898
|||||| |||||||| || | || | ||||| || ||| | | || |||||||||||
Sbjct 641741 GTCCACGGTGAACTGGATAG-GTGC--GGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 641685
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
||||| |||||| | ||| ||| | ||||||||||| | |||| || ||||
Sbjct 641684 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 641625
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018
|| |||||||||||| ||||||||| ||||||||||||| | || || || ||
Sbjct 641624 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 641565
Query 204019 CATATTGATAATG-GTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077
||| | | | | ||| | || ||||| ||||| || || ||| | | || || |||
Sbjct 641564 CATCTGCACGACGTGTCGT-TGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 641506
Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136
|| | | | | | ||| || || ||||| ||||| || | | || ||
Sbjct 641505 CGGCCGGGATGT-TGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTC 641447
Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196
| | || ||| | ||||| || || || || ||| |||||||| | |
Sbjct 641446 ATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACC 641387
Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256
|| || || || | ||| || | || | | | |||| ||| | || ||||| |
Sbjct 641386 TGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCAC 641327
Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316
|| ||||| || | |||||||| ||| ||||| |||||||| || || ||||| |||
Sbjct 641326 TCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAG 641267
Query 204317 TTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||||| | || | | | || |||| ||||||| |||| || | ||
Sbjct 641266 TTGCGAATTCCATGCTCCTTGA-TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAGA 641208
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411
|| |||||| |||||||||| ||||||| |||||
Sbjct 641207 AGGCTTCACGTCCCACATGTCAAACTGAAGAATGCC 641172
Score = 96.9 bits (106), Expect = 6e-15
Identities = 355/543 (65%), Gaps = 16/543 (3%)
Strand=Plus/Minus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
||| || ||| || || ||| |||| || ||||| ||| ||| || || ||
Sbjct 640604 CTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCA 640545
Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAG 205176
|| ||||| |||||||||| ||| ||| | ||| ||| || | || ||| || ||
Sbjct 640544 TTCGTTGGGGCACATCAGAGTCCA-ATC--ACCGTTCTTCTCGACGCGCTTCATGAAAAG 640488
Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236
||| ||||| || | || | |||||| || | | | | || | || | ||
Sbjct 640487 ATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATT 640428
Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296
|||| ||| || || | | | ||||||||||| ||||| || | | ||| |
Sbjct 640427 CTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAA 640368
Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356
||||| || | |||||| ||||||||||| || | | | | ||||||||| ||
Sbjct 640367 AGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACG 640308
Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGC 205416
||||| || | | ||| |||| |||||||| |||| | ||| ||||| ||
Sbjct 640307 AAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC 640248
Query 205417 CCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA- 205473
| | || |||| || | ||| || || |||| ||||| |||| ||||||
Sbjct 640247 GCGAATGCGGTGGACAT--TCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAG 640190
Query 205474 CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGC 205532
||||| || ||| |||||||| ||||| || ||| || |||| || || |||
Sbjct 640189 GTCTTG-AGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCA-TGTCGACGAGGAAGC 640132
Query 205533 ACGAAGCCAGCTTGGCAAAGTTG-GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591
| || | |||| || || | | ||||| |||| ||| || ||||| |||||| ||
Sbjct 640131 AAGACGACAGC-TGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTG 640073
Query 205592 AAG 205594
|||
Sbjct 640072 AAG 640070
>seq103
Length=87482
Score = 109 bits (120), Expect = 9e-19
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975
||| | ||| |||||||| |||||| ||||| || || ||||| || |||||||| |
Sbjct 35289 CAGCAAGCAGGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAA 35230
Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035
| |||| || ||||| | |||||| || ||||| || || | ||||||||||||||
Sbjct 35229 GGTGAGACCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCT 35170
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068
|| || || || |||||||| ||||| || ||
Sbjct 35169 GAAGAAAATACCTTCCACGGCAGCAAAAGCAAC 35137
>seq112
Length=75797
Score = 86.0 bits (94), Expect = 1e-11
Identities = 75/91 (82%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 116097 TGTCTGTTTTACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAG 116155
|||| || |||||| |||| ||| |||||||| |||||||| ||||| ||| |||||||
Sbjct 40886 TGTCAATTATACCAACGATCCTGC-GACATGGGATTGGGCGTGCCCTTCAACATTGCGAG 40944
Query 116156 CTACGCGCTACTGACTCATATTATGGCACAT 116186
||||||||| || || || || || ||||||
Sbjct 40945 CTACGCGCTCCTCACCCACATGATCGCACAT 40975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795128035510480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |