Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq36 134 3e-26
seq6 109 1e-18
>seq36
Length=230664
Score = 134 bits (148), Expect = 3e-26
Identities = 146/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| |||||||| || | ||||||||| || | |||| |||||| || ||||| || |||
Sbjct 21074 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 21133
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|||||||| |||||||||||||| ||| ||| |||||| || ||||||||| ||||
Sbjct 21134 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 21193
Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612
||| || | ||||| | | ||| || || | ||||| ||||| || ||||| ||
Sbjct 21194 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 21253
Query 199613 TTCACAAAAATTTG 199626
|| || || || ||
Sbjct 21254 TTGACGAAGATCTG 21267
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| ||||| |||||||| || ||||| |||| ||||||||| || | || | || ||
Sbjct 21577 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 21636
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| || || || |||||||| ||||| ||| |||||| || |||
Sbjct 21637 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 21696
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| |||||| | || || || || | ||||| |||
Sbjct 21697 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 21756
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| || ||||| ||
Sbjct 21757 TTGCCGGTAAGGGTTTTGACGAAAATCTG 21785
Score = 95.1 bits (104), Expect = 3e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| ||||| || || || |||||||| |||| ||| || || || | || | || |||
Sbjct 21287 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCT 21346
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| ||| || || ||||| || |||||||||||||| ||| ||| ||||| ||
Sbjct 21347 TCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 21406
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
||||||||| || || |||| || || | | ||| || || | || || |||
Sbjct 21407 TGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTC 21466
Query 199598 TTACCCGTGAGAGTTTTCACAA 199619
|| || || | ||| || ||||
Sbjct 21467 TTTCCGGTCAAAGTCTTGACAA 21488
>seq6
Length=626929
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | ||| || || |||||| |||| ||||||||| |||| ||
Sbjct 11354 CGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 11413
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || || |||||||| ||||||||||| || || ||
Sbjct 11414 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCC 11473
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| || || ||| ||| |||| |||||| | | || || || |
Sbjct 11474 TCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 11533
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || ||||| || || || ||||| ||
Sbjct 11534 GTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTG 11571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178880318218111
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |