Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq36 111 6e-19
seq90 100 1e-15
>seq36
Length=230664
Score = 111 bits (122), Expect = 6e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131
|||| || || || ||||| || || || ||||| ||||||| || || | | |||
Sbjct 21476 TGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGACAATGTCAAAT 21417
Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191
||| |||||||| |||||||| ||||||||||| || || ||| | |||||| | || |
Sbjct 21416 CAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCA 21357
Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251
|||| | ||||| || | || | || |||||||| || | ||||| | |||||||
Sbjct 21356 AACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAGTCCACACTTC 21297
Query 391252 A 391252
|
Sbjct 21296 A 21296
Score = 105 bits (116), Expect = 3e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| ||||| || || || || || || |||||||| || || ||||||
Sbjct 21788 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 21729
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | | || || ||||| || ||||| |||||||||||||| |||
Sbjct 21728 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 21669
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | ||||| | || || || ||||| || || | || | || || || ||
Sbjct 21668 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 21609
Query 391230 ATTGATAAGGATGCAACACTTCA 391252
|| | ||||| |||| || ||
Sbjct 21608 ATCCAGAAGGAATCAACTCTCCA 21586
>seq90
Length=99827
Score = 100 bits (110), Expect = 1e-15
Identities = 265/401 (66%), Gaps = 4/401 (1%)
Strand=Plus/Plus
Query 452091 CACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAG 452150
||||||| || || || ||||||| |||||||| |||||||| || || ||| |||
Sbjct 50417 CACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCTCGAA 50476
Query 452151 GAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAG 452210
|| | ||||| || |||| | | || ||| || |||||||| || |
Sbjct 50477 ACACAACCATTCCCACAAAGAAGACTGAGACGTTTTCGACGTTTTCAGATAACCAGCCTG 50536
Query 452211 GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGA--GATAATAATAAACT 452268
| || |||||||||| || || || || || | ||| | || || || |
Sbjct 50537 GCGTCCTCATTCAAGTGTACGAGGGTGAGCGC-CAGCG-CACTAAGGACAACAACTTGAT 50594
Query 452269 AGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAAT 452328
|| |||| ||| | ||||||||| ||| | ||| |||||| |||||| |
Sbjct 50595 GGGCAAATTCGAACTTACTGGCATTCCTCCCGCGCCCCGCGGAGTTCCTCAGATTGAAGT 50654
Query 452329 TACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGG 452388
||| | |||| ||||||| |||||||| | || ||| || | || ||| ||||
Sbjct 50655 TACATTTGATCTTGATGCCAATGGTATCATGAACGTGTCCGCTCTGGAGAAAGGTACTGG 50714
Query 452389 AAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGA 452448
|| || | || ||| || || ||||| || ||| | || || ||||| || ||
Sbjct 50715 CAAGTCCAACAAGATTGTCATCACCAATGACAAGGGTCGTCTGTCCAAGGAAGAGATCGA 50774
Query 452449 AAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATG 452489
||||||| |||||| |||||||||||||| |||||
Sbjct 50775 GCGCATGGTAGCTGAAGCTGAAAAATTCAAGGAGAGTGATG 50815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975649217133164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |