Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq36 111 6e-19 seq90 100 1e-15 >seq36 Length=230664 Score = 111 bits (122), Expect = 6e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 |||| || || || ||||| || || || ||||| ||||||| || || | | ||| Sbjct 21476 TGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGACAATGTCAAAT 21417 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 ||| |||||||| |||||||| ||||||||||| || || ||| | |||||| | || | Sbjct 21416 CAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCA 21357 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 |||| | ||||| || | || | || |||||||| || | ||||| | ||||||| Sbjct 21356 AACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAGTCCACACTTC 21297 Query 391252 A 391252 | Sbjct 21296 A 21296 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || |||||||| || || |||||| Sbjct 21788 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 21729 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || ||||| || ||||| |||||||||||||| ||| Sbjct 21728 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 21669 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || ||||| || || | || | || || || || Sbjct 21668 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 21609 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||| || || Sbjct 21608 ATCCAGAAGGAATCAACTCTCCA 21586 >seq90 Length=99827 Score = 100 bits (110), Expect = 1e-15 Identities = 265/401 (66%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 452091 CACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAG 452150 ||||||| || || || ||||||| |||||||| |||||||| || || ||| ||| Sbjct 50417 CACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCTCGAA 50476 Query 452151 GAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAG 452210 || | ||||| || |||| | | || ||| || |||||||| || | Sbjct 50477 ACACAACCATTCCCACAAAGAAGACTGAGACGTTTTCGACGTTTTCAGATAACCAGCCTG 50536 Query 452211 GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGA--GATAATAATAAACT 452268 | || |||||||||| || || || || || | ||| | || || || | Sbjct 50537 GCGTCCTCATTCAAGTGTACGAGGGTGAGCGC-CAGCG-CACTAAGGACAACAACTTGAT 50594 Query 452269 AGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAAT 452328 || |||| ||| | ||||||||| ||| | ||| |||||| |||||| | Sbjct 50595 GGGCAAATTCGAACTTACTGGCATTCCTCCCGCGCCCCGCGGAGTTCCTCAGATTGAAGT 50654 Query 452329 TACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGG 452388 ||| | |||| ||||||| |||||||| | || ||| || | || ||| |||| Sbjct 50655 TACATTTGATCTTGATGCCAATGGTATCATGAACGTGTCCGCTCTGGAGAAAGGTACTGG 50714 Query 452389 AAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGA 452448 || || | || ||| || || ||||| || ||| | || || ||||| || || Sbjct 50715 CAAGTCCAACAAGATTGTCATCACCAATGACAAGGGTCGTCTGTCCAAGGAAGAGATCGA 50774 Query 452449 AAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATG 452489 ||||||| |||||| |||||||||||||| ||||| Sbjct 50775 GCGCATGGTAGCTGAAGCTGAAAAATTCAAGGAGAGTGATG 50815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975649217133164