Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq90 149 5e-30
seq126 91.5 1e-12
>seq90
Length=99827
Score = 149 bits (164), Expect = 5e-30
Identities = 229/327 (70%), Gaps = 0/327 (0%)
Strand=Plus/Minus
Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040
||| ||||||||||| ||| ||| | |||| || |||||||||||||| |||||
Sbjct 49911 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACGAGGCGATTATCAAAATCCTCACC 49852
Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100
||||| | || | || | || || | |||| || | ||| ||||||| || |||
Sbjct 49851 ACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCCGTCTTCAATAGTCAA 49792
Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160
|||| |||||| ||| || || || | ||||| || || ||||| || ||
Sbjct 49791 GAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCACATTGCGCTCGCCTTC 49732
Query 518161 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220
|| || ||||| || ||||||| ||| |||||||| || |||||||| || | |||
Sbjct 49731 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTCATTAATGATACGCAA 49672
Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280
| || | || ||||| | || || || || || ||||| | || || ||||||||
Sbjct 49671 GATGTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 49612
Query 518281 ATATGCAGGAACAGTAATAACGGCATC 518307
||||| |||||||| | || |||||
Sbjct 49611 GTATGCTGGAACAGTGACTACAGCATC 49585
Score = 125 bits (138), Expect = 5e-23
Identities = 437/669 (65%), Gaps = 11/669 (2%)
Strand=Plus/Minus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
|||||||||||||| | ||||||||| |||||||| ||||| || || | | || ||
Sbjct 50681 ATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGA 50622
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
|| || || | | ||| | |||| || || || |||||| | || |||
Sbjct 50621 GGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCTGGCGCTCA 50562
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA-TACTCT 517452
|||||| | | ||| || || ||| || ||||||||| | || | ||| |||
Sbjct 50561 CCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTCTCA 50502
Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512
| || ||| ||||| |||||||||| | ||| | || ||||| |||||||| ||
Sbjct 50501 GTCTTCTTT-GTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATACCACCAGC 50443
Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 517570
||||| | || || || ||||| | || |||| || | || | |||| | ||
Sbjct 50442 AGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGACTT 50383
Query 517571 TCAT-CAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628
|| ||| | ||| ||||| ||||| || || | |||||| |||| || ||||| |
Sbjct 50382 GGATGTAGTATCTCCAGACAAG-ATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGCCT 50324
Query 517629 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 517688
| ||||| || | ||| | | |||| |||||||| | | || || | ||
Sbjct 50323 CGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGTCGCTAATGAGAT-TC 50265
Query 517689 T-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747
| || |||||| |||| || ||||| |||| ||||| || || || || || ||
Sbjct 50264 TGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGACTTGAGACTTG 50205
Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCT 517807
|| ||||| | || | || || || || | ||| | || |||| |||
Sbjct 50204 TCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGATCGGAACAGATCT 50145
Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 517867
|| ||||||||||| || | |||| | | || ||||| || ||||||
Sbjct 50144 TGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTCAATGCCCTCGAAC 50085
Query 517868 AAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926
|| ||||||| |||| | || ||| || | || || || ||||| || || |||||
Sbjct 50084 AACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCACGCTTCGCTCGTTC 50026
Query 517927 ACATGCTGT 517935
||| || ||
Sbjct 50025 ACAGGCCGT 50017
>seq126
Length=56475
Score = 91.5 bits (100), Expect = 1e-12
Identities = 191/282 (68%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324
|| || ||||| ||||||||||||| || || | || ||||||||||| || || |
Sbjct 41374 ACTTTGAGAATGCCATTGGCATCCAGCTCGAACGACACCTCAATTTGAGGAACACCGCGA 41315
Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384
|||| || || || ||| | | || |||| || ||||| ||||| || ||||
Sbjct 41314 GGAGCGGGGGGAATGCCTGTGAGCTCGAACTTTCCAAGGTTATTGTTATCCTTGGTGAGA 41255
Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444
|||||| |||||| | | |||||| || |||| || ||||| | | || |
Sbjct 41254 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 41195
Query 517445 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503
|| | ||||| | || | |||||| | ||||| | ||| | ||||||||||
Sbjct 41194 AAGA-TCTGGCTCTTGCGAGTAGGAATAGGAGTGTTGCGGGGAATCAACTTGGTCATAAC 41136
Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 517545
||||| | || || | ||||||| ||||| |||||||
Sbjct 41135 TCCACCAGTGGTCTCAATGCCAAGAGTCAGAGGGTTGACATC 41094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780686779537498
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |