Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq90 149 5e-30 seq126 91.5 1e-12 >seq90 Length=99827 Score = 149 bits (164), Expect = 5e-30 Identities = 229/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040 ||| ||||||||||| ||| ||| | |||| || |||||||||||||| ||||| Sbjct 49911 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACGAGGCGATTATCAAAATCCTCACC 49852 Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100 ||||| | || | || | || || | |||| || | ||| ||||||| || ||| Sbjct 49851 ACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCCGTCTTCAATAGTCAA 49792 Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 |||| |||||| ||| || || || | ||||| || || ||||| || || Sbjct 49791 GAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCACATTGCGCTCGCCTTC 49732 Query 518161 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220 || || ||||| || ||||||| ||| |||||||| || |||||||| || | ||| Sbjct 49731 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTCATTAATGATACGCAA 49672 Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 | || | || ||||| | || || || || || ||||| | || || |||||||| Sbjct 49671 GATGTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 49612 Query 518281 ATATGCAGGAACAGTAATAACGGCATC 518307 ||||| |||||||| | || ||||| Sbjct 49611 GTATGCTGGAACAGTGACTACAGCATC 49585 Score = 125 bits (138), Expect = 5e-23 Identities = 437/669 (65%), Gaps = 11/669 (2%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 |||||||||||||| | ||||||||| |||||||| ||||| || || | | || || Sbjct 50681 ATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGA 50622 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || || || | | ||| | |||| || || || |||||| | || ||| Sbjct 50621 GGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCTGGCGCTCA 50562 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA-TACTCT 517452 |||||| | | ||| || || ||| || ||||||||| | || | ||| ||| Sbjct 50561 CCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTCTCA 50502 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 | || ||| ||||| |||||||||| | ||| | || ||||| |||||||| || Sbjct 50501 GTCTTCTTT-GTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATACCACCAGC 50443 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 517570 ||||| | || || || ||||| | || |||| || | || | |||| | || Sbjct 50442 AGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGACTT 50383 Query 517571 TCAT-CAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628 || ||| | ||| ||||| ||||| || || | |||||| |||| || ||||| | Sbjct 50382 GGATGTAGTATCTCCAGACAAG-ATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGCCT 50324 Query 517629 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 517688 | ||||| || | ||| | | |||| |||||||| | | || || | || Sbjct 50323 CGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGTCGCTAATGAGAT-TC 50265 Query 517689 T-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747 | || |||||| |||| || ||||| |||| ||||| || || || || || || Sbjct 50264 TGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGACTTGAGACTTG 50205 Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCT 517807 || ||||| | || | || || || || | ||| | || |||| ||| Sbjct 50204 TCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGATCGGAACAGATCT 50145 Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 517867 || ||||||||||| || | |||| | | || ||||| || |||||| Sbjct 50144 TGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTCAATGCCCTCGAAC 50085 Query 517868 AAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926 || ||||||| |||| | || ||| || | || || || ||||| || || ||||| Sbjct 50084 AACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCACGCTTCGCTCGTTC 50026 Query 517927 ACATGCTGT 517935 ||| || || Sbjct 50025 ACAGGCCGT 50017 >seq126 Length=56475 Score = 91.5 bits (100), Expect = 1e-12 Identities = 191/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || ||||| ||||||||||||| || || | || ||||||||||| || || | Sbjct 41374 ACTTTGAGAATGCCATTGGCATCCAGCTCGAACGACACCTCAATTTGAGGAACACCGCGA 41315 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 |||| || || || ||| | | || |||| || ||||| ||||| || |||| Sbjct 41314 GGAGCGGGGGGAATGCCTGTGAGCTCGAACTTTCCAAGGTTATTGTTATCCTTGGTGAGA 41255 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 |||||| |||||| | | |||||| || |||| || ||||| | | || | Sbjct 41254 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 41195 Query 517445 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || | ||||| | || | |||||| | ||||| | ||| | |||||||||| Sbjct 41194 AAGA-TCTGGCTCTTGCGAGTAGGAATAGGAGTGTTGCGGGGAATCAACTTGGTCATAAC 41136 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 517545 ||||| | || || | ||||||| ||||| ||||||| Sbjct 41135 TCCACCAGTGGTCTCAATGCCAAGAGTCAGAGGGTTGACATC 41094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780686779537498