Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq90 174 2e-38 seq32 138 1e-27 >seq90 Length=99827 Score = 174 bits (192), Expect = 2e-38 Identities = 210/283 (74%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||| |||||||||||||| || || || || || || || ||||||||||| || Sbjct 49866 ATCAAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCC 49807 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||||| | || | || |||||||| ||||| || || |||||||| || || || Sbjct 49806 GTCTTCAATAGTCAAGAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCAC 49747 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || ||| | || ||||| || || |||||||| ||||| || || || || || Sbjct 49746 ATTGCGCTCGCCTTCAGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTC 49687 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 |||||| ||||| |||| ||| | || ||||| || | || || || |||||||| | Sbjct 49686 ATTAATGATACGCAAGAT-GTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGAC 49628 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 | ||||| ||||||||||| || || || || || || || || Sbjct 49627 GCTGCGAGTCGTTAAAGTATGCTGGAACAGTGACTACAGCATC 49585 Score = 95.1 bits (104), Expect = 2e-14 Identities = 553/874 (63%), Gaps = 37/874 (4%) Strand=Plus/Minus Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCA------ 6577 ||| |||| ||||||||||| || ||||| || | ||||||| || || Sbjct 50861 TAGCTTTCAAGACCATTCTTGGCATCGAC-----ACGAG-CCTTTTCAGCTGCATCACTC 50808 Query 6578 TCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCC 6637 || || | ||||| || || ||||| || || ||||| || || | | ||| Sbjct 50807 TCCTTGAATTTTTCAGCTTCAGCTACCATGCGCTCGATCTCTTCCTTGGACAGACGACCC 50748 Query 6638 TTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACA 6697 || ||||| || || |||||| | ||| || || || | | ||| ||| | ||| Sbjct 50747 TTGTCATTGGTGATGACAATCTTGTTGGACTTGCC--AGTACCTTTCTCCAGAGCGGACA 50690 Query 6698 --TTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG 6755 |||| |||||||| ||||||| ||| || | || | ||| || || || | | Sbjct 50689 CGTTCATGATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGG 50630 Query 6756 GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCT 6815 | |||| ||||| || || | || ||| | || | || |||| ||| | | || Sbjct 50629 GCGCGGGAGGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCT 50570 Query 6816 TACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGA 6875 || ||||| || || |||| ||| || |||| || |||||| ||| || | Sbjct 50569 GGCGCTCACCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAA 50510 Query 6876 AGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATAC 6935 | | | ||||| | ||||| || || |||| ||||| | | ||||| |||| Sbjct 50509 ACGTCTCAGTCTTCTTTGTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATAC 50450 Query 6936 CACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC----- 6990 |||| |||||| | || || || ||||||| ||||| | || || | || Sbjct 50449 CACCAGCAGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTG 50390 Query 6991 TTGA-ACAGAT-TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 |||| ||| | || || || | ||||| || || || || | || || | Sbjct 50389 TTGACTTGGATGTAGT----ATCTCCAGACAAGATAGCAGCCTGTACAGCAGCGCCATTG 50334 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || || ||||| || ||||| || |||| | | ||| || || || || | || | Sbjct 50333 GCTACAGCCTCGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGT-CGCT 50275 Query 7109 AA-CATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 || | | |||| || || || || || || || || | ||| || || | || Sbjct 50274 AATGAGATTCTGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGAC 50215 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTT 7224 || || || |||| || | ||| || || ||||| | | || || Sbjct 50214 TTGAGACTTGTCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGAT-- 50157 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 ||||||| || || ||||| || ||||| ||||||||||| | || || | || Sbjct 50156 -CGGAACAGATCTTGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTC 50098 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGT-TTGTGCCGTCGAAGATAACGTTC 7343 || ||| ||| | ||||||||||| |||| | |||| ||||| | | || | | | Sbjct 50097 AATGCCCTCGAACAACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCAC 50039 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377 |||| || || ||||| ||||| || | |||||| Sbjct 50038 GCTTCGCTCGTTCACAGGCCGTGCGAAGACGACG 50005 >seq32 Length=259671 Score = 138 bits (152), Expect = 1e-27 Identities = 357/538 (66%), Gaps = 7/538 (1%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||||||||| ||||| || ||||| ||| || |||| ||| | | || ||| Sbjct 111966 TCCTCAAAACGAGCACGAGTCATGGACAGGGTGAAGTCCTCGCCATCGAAGAGAGAGTCA 112025 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAA-GATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 || || ||||| | || || | || || | || ||||| || ||||| || || || Sbjct 112026 ATCTCGATGGTAGCCTGGGC-GCCGCTTGACAGGGTACGCTTGGCACGCTCGCAAGCAGT 112084 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 ||| | | || || ||||| | | ||| | ||| ||||| || || | || Sbjct 112085 TCGAAGTCTTCGCAGAGCACGGGCATCGCCGCTTAGATCCTTCTTGGTCTTGCGGGTGAA 112144 Query 7426 CTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 || | | |||| |||| ||| ||| |||||||| | |||||| | ||| || | Sbjct 112145 TTCCTTCTTGCAGTGGTCGAGCAAGT-TCGTGTCGAAATCCTGACCACCAAGGTGGGTGT 112203 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || ||||| || ||||| || | ||| || | ||||| | | || ||||| | Sbjct 112204 CACCAGCGGTGGCCTTGACAGTGAAAACACCGCCCTGGATGTTAAGGAGAGACACATCGA 112263 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTAT 7601 | ||||||||||| || ||| | || || ||||| || | || ||| Sbjct 112264 AGGTACCACCACCAAGATCATAGATCAGAACGTTACGCTCCTTCTCAGACTTGCCAGAGC 112323 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661 | ||||| || ||||| || || || || ||||| ||||| ||||| || ||| |||| Sbjct 112324 CCAGACCATATGCGATGGCGGCGGCAGTGGGTTCGTTAATGATACGGAGGACGTTGAGGC 112383 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 ||||||| | | ||||| || || || || || || ||||| |||||||| || | Sbjct 112384 CAGCAATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGAA 112443 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | || | ||| || | | ||| ||||| || || | | || || || |||||||| Sbjct 112444 CAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCTTTCAT 112501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635111102275720