Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq90 174 2e-38
seq32 138 1e-27
>seq90
Length=99827
Score = 174 bits (192), Expect = 2e-38
Identities = 210/283 (74%), Gaps = 2/283 (1%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| ||||| |||||||||||||| || || || || || || || ||||||||||| ||
Sbjct 49866 ATCAAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCC 49807
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
||||||| | || | || |||||||| ||||| || || |||||||| || || ||
Sbjct 49806 GTCTTCAATAGTCAAGAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCAC 49747
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
|| ||| | || ||||| || || |||||||| ||||| || || || || ||
Sbjct 49746 ATTGCGCTCGCCTTCAGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTC 49687
Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
|||||| ||||| |||| ||| | || ||||| || | || || || |||||||| |
Sbjct 49686 ATTAATGATACGCAAGAT-GTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGAC 49628
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737
| ||||| ||||||||||| || || || || || || || ||
Sbjct 49627 GCTGCGAGTCGTTAAAGTATGCTGGAACAGTGACTACAGCATC 49585
Score = 95.1 bits (104), Expect = 2e-14
Identities = 553/874 (63%), Gaps = 37/874 (4%)
Strand=Plus/Minus
Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCA------ 6577
||| |||| ||||||||||| || ||||| || | ||||||| || ||
Sbjct 50861 TAGCTTTCAAGACCATTCTTGGCATCGAC-----ACGAG-CCTTTTCAGCTGCATCACTC 50808
Query 6578 TCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCC 6637
|| || | ||||| || || ||||| || || ||||| || || | | |||
Sbjct 50807 TCCTTGAATTTTTCAGCTTCAGCTACCATGCGCTCGATCTCTTCCTTGGACAGACGACCC 50748
Query 6638 TTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACA 6697
|| ||||| || || |||||| | ||| || || || | | ||| ||| | |||
Sbjct 50747 TTGTCATTGGTGATGACAATCTTGTTGGACTTGCC--AGTACCTTTCTCCAGAGCGGACA 50690
Query 6698 --TTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG 6755
|||| |||||||| ||||||| ||| || | || | ||| || || || | |
Sbjct 50689 CGTTCATGATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGG 50630
Query 6756 GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCT 6815
| |||| ||||| || || | || ||| | || | || |||| ||| | | ||
Sbjct 50629 GCGCGGGAGGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCT 50570
Query 6816 TACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGA 6875
|| ||||| || || |||| ||| || |||| || |||||| ||| || |
Sbjct 50569 GGCGCTCACCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAA 50510
Query 6876 AGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATAC 6935
| | | ||||| | ||||| || || |||| ||||| | | ||||| ||||
Sbjct 50509 ACGTCTCAGTCTTCTTTGTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATAC 50450
Query 6936 CACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC----- 6990
|||| |||||| | || || || ||||||| ||||| | || || | ||
Sbjct 50449 CACCAGCAGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTG 50390
Query 6991 TTGA-ACAGAT-TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048
|||| ||| | || || || | ||||| || || || || | || || |
Sbjct 50389 TTGACTTGGATGTAGT----ATCTCCAGACAAGATAGCAGCCTGTACAGCAGCGCCATTG 50334
Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108
|| || ||||| || ||||| || |||| | | ||| || || || || | || |
Sbjct 50333 GCTACAGCCTCGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGT-CGCT 50275
Query 7109 AA-CATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167
|| | | |||| || || || || || || || || | ||| || || | ||
Sbjct 50274 AATGAGATTCTGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGAC 50215
Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTT 7224
|| || || |||| || | ||| || || ||||| | | || ||
Sbjct 50214 TTGAGACTTGTCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGAT-- 50157
Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284
||||||| || || ||||| || ||||| ||||||||||| | || || | ||
Sbjct 50156 -CGGAACAGATCTTGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTC 50098
Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGT-TTGTGCCGTCGAAGATAACGTTC 7343
|| ||| ||| | ||||||||||| |||| | |||| ||||| | | || | | |
Sbjct 50097 AATGCCCTCGAACAACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCAC 50039
Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377
|||| || || ||||| ||||| || | ||||||
Sbjct 50038 GCTTCGCTCGTTCACAGGCCGTGCGAAGACGACG 50005
>seq32
Length=259671
Score = 138 bits (152), Expect = 1e-27
Identities = 357/538 (66%), Gaps = 7/538 (1%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||||||||| ||||| || ||||| ||| || |||| ||| | | || |||
Sbjct 111966 TCCTCAAAACGAGCACGAGTCATGGACAGGGTGAAGTCCTCGCCATCGAAGAGAGAGTCA 112025
Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAA-GATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365
|| || ||||| | || || | || || | || ||||| || ||||| || || ||
Sbjct 112026 ATCTCGATGGTAGCCTGGGC-GCCGCTTGACAGGGTACGCTTGGCACGCTCGCAAGCAGT 112084
Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425
||| | | || || ||||| | | ||| | ||| ||||| || || | ||
Sbjct 112085 TCGAAGTCTTCGCAGAGCACGGGCATCGCCGCTTAGATCCTTCTTGGTCTTGCGGGTGAA 112144
Query 7426 CTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484
|| | | |||| |||| ||| ||| |||||||| | |||||| | ||| || |
Sbjct 112145 TTCCTTCTTGCAGTGGTCGAGCAAGT-TCGTGTCGAAATCCTGACCACCAAGGTGGGTGT 112203
Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544
| || ||||| || ||||| || | ||| || | ||||| | | || ||||| |
Sbjct 112204 CACCAGCGGTGGCCTTGACAGTGAAAACACCGCCCTGGATGTTAAGGAGAGACACATCGA 112263
Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTAT 7601
| ||||||||||| || ||| | || || ||||| || | || |||
Sbjct 112264 AGGTACCACCACCAAGATCATAGATCAGAACGTTACGCTCCTTCTCAGACTTGCCAGAGC 112323
Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661
| ||||| || ||||| || || || || ||||| ||||| ||||| || ||| ||||
Sbjct 112324 CCAGACCATATGCGATGGCGGCGGCAGTGGGTTCGTTAATGATACGGAGGACGTTGAGGC 112383
Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721
||||||| | | ||||| || || || || || || ||||| |||||||| || |
Sbjct 112384 CAGCAATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGAA 112443
Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
| || | ||| || | | ||| ||||| || || | | || || || ||||||||
Sbjct 112444 CAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCTTTCAT 112501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635111102275720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |