Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 223 4e-53 seq23 105 8e-18 seq103 96.9 4e-15 >seq4 Length=676188 Score = 223 bits (246), Expect = 4e-53 Identities = 1114/1743 (64%), Gaps = 51/1743 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| ||||| |||| ||| || || ||||||| || Sbjct 639978 CCCCAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTC 640037 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||| || ||| | |||||| | | |||| ||||| |||| || || ||| Sbjct 640038 CTGGAAACCTACCATCTCATGTCCAGCAAACTCTTCACACACGCCTCACCCACACTATTC 640097 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 |||||||| ||||| | || |||| ||| ||||| | | | |||||||| Sbjct 640098 AACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGGAC 640157 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | ||||| || | ||| |||| || ||| ||||| ||| ||||||| Sbjct 640158 AGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGT 640217 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909 |||||||| || | |||| | | |||| | ||| || || || || | Sbjct 640218 GGTATCGGCTTGAATGTCCACCGCATTCGCGCCACT--GGCTCCTACATTGCCGGCACCA 640275 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || ||||| | ||||| |||||||| || || ||| ||| || | |||| Sbjct 640276 ACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATG 640335 Query 111970 TAAACCAAGCTGGGCGTCGCAAGGGATCTATCGCAGT--CTAT---CTTG-AGCCATGGC 112023 | |||| | ||| |||| || || ||| | | || |||| |||| |||| Sbjct 640336 TCGACCAGGGTGGCAA---CAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGC 640392 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| | | ||||||||||| ||||| || || || | || || | || | Sbjct 640393 ACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCG-T 640451 Query 112084 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 || || ||| | ||| ||||| |||||||| ||||| ||||||||| | || ||| || Sbjct 640452 GCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAG 640511 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 | || ||||| |||| | || || || || || ||||| || | || | || Sbjct 640512 AACGGTGATTGGACTCTGATGTGCCCCAACGAATGC-CCCGGCCTGGCTGACTGCTACGG 640570 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGA----AAGTCGGGCGACTGCGA 112257 ||||||||||| || ||||| |||||| ||| || ||| || || ||||| Sbjct 640571 CGAGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAG--GGTCG--TGCGA 640626 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | | | || | || | | ||| | | || || || | || || ||||| |||| Sbjct 640627 CCATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAAT 640685 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| || ||||| ||| ||||| || || ||||| ||||| Sbjct 640686 CCTTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACA 640745 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || |||||||| || || ||||| | || | | | | |||||| ||| Sbjct 640746 ATCCGCAGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCT 640805 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || || ||| | || || | ||||| || | || || | | | | ||| | Sbjct 640806 GTTTGCAACTTGGCCTCTCTGGCTCTGCCTGCCTTCGTAGA-CTACAACGAGGGACGCTA 640864 Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 || | | || |||||||| || || | || ||||| |||||| | || Sbjct 640865 CGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCAT 640924 Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 |||| || |||||||| || || || || || ||| ||||||| || || Sbjct 640925 TGATGTCAACCACTACCCCGTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGAT 640984 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATT 112674 |||| | || ||||| |||||||| || | ||| || | ||| ||| ||||||| | Sbjct 640985 TGGTGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCTTGCCTTG-CGCATGCCATTTGAGT 641043 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734 || || || || |||| || ||||||||||| || || || || || || Sbjct 641044 CCCCTGAGGCCCGTGAGCTCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCA 641103 Query 112735 AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 || | || ||||| ||| | || || || ||||||||||| ||||| | Sbjct 641104 CTGCCTCTGTCGAATTGGCCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCG 641163 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGA 112852 | || | || | ||||| ||||| ||||||| | |||| | | || | || || Sbjct 641164 CCTCCGAGGGCATTCTTCAGTTTGACATGTGGG-ACGTGA-AGCCTTCTGACCTCTGGGA 641221 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||| | ||| ||||| | ||||||||| | || |||| ||| || || | || Sbjct 641222 GTGGAATAGTCTGAAGGAGCAGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGC 641281 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || || || ||| | || || | ||||| ||||| ||||| || || || Sbjct 641282 CCCCATGCCTACGGCTTCTACCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTA 641341 Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032 |||| | ||||| || | | | ||| || || || || | |||||||| Sbjct 641342 CACGTCCAACATTTACCAACGCCGTGTCCTGGCAGGTGAATTCCAGGTTGTCAACCCCTG 641401 Query 113033 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCA- 113088 || || | || ||| || || || || ||||| | | ||||||| | | ||| Sbjct 641402 GCTGCTGAAAGATCTCGTCGACATGGGCCTTTGGTCTGATGCTATGAAGAACCGTATCAT 641461 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 || || | | ||||||||||| ||||| | || || | || || || Sbjct 641462 TGCCGAGAAC----GGTTCCATTCAGAATATCCCCAACATCCCGGCCGACATCAAAGCTC 641517 Query 113149 TGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 | ||| || |||||||||| || | || | ||| | | ||||| || || || Sbjct 641518 TCTACAAAACTGTTTGGGAAATTTCTCAACGA--CACGTCGTGCAGATGGCTGCTGACCG 641575 Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAG--TATGAATCTATTCATGGAAAGTCCAACGATG 113264 |||| ||||| || | |||| || | | || | |||| | ||| || ||| Sbjct 641576 TGGTGCTTTCATCGACC--AGTCCCAGTCTCTTAACATTCACATGAAGGATCCCACTATG 641633 Query 113265 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 113324 |||| || |||| |||||| | | | ||||| ||| ||||| ||||| ||||| Sbjct 641634 GGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGGCATGTAC 641693 Query 113325 TAC 113327 ||| Sbjct 641694 TAC 641696 >seq23 Length=320936 Score = 105 bits (116), Expect = 8e-18 Identities = 186/267 (70%), Gaps = 18/267 (7%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||| || ||||||||||| | |||||| ||| ||| | |||| | | |||| || Sbjct 129185 GGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGCAAATAG 129244 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC- 16182 ||| || || || | || |||||||||||||| || ||||| | |||||| Sbjct 129245 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATT------CGGAACC 129298 Query 16183 -ATT----GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 || | ||| || ||| ||||||||| || ||||| || | ||| || || Sbjct 129299 GCTTACGCTAAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTTTT 129358 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-C 16294 || |||||||| |||||||||| || || || ||||||||||| || |||| | Sbjct 129359 GCCAGTACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTCTC 129418 Query 16295 AAAGTATCTCTCAGGTTGCTTAAGAAA 16321 ||| | ||||||| || || ||||| Sbjct 129419 AAACT---TCTCAGGCTGTTTGAGAAA 129442 >seq103 Length=87482 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/229 (71%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAG- 102164 || |||||| || |||| ||||| || ||||||||||| ||| || | |||||| Sbjct 35055 AATAGTTCCTTGCATTCGCAAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGA 35114 Query 102165 -TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 || | ||| || |||| | | || ||||| || || ||||| |||||| Sbjct 35115 ATCCAG---CTTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAG 35171 Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282 ||| | || ||| |||| | ||||| |||||||| || | ||||| |||||| || Sbjct 35172 CGGTGCTTT-TGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCT 35230 Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||||| | ||||| ||||| ||||| || ||| ||| ||||| Sbjct 35231 TCTCCAACGAATTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGC 35279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620721193887760