Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4 223 4e-53
seq23 105 8e-18
seq103 96.9 4e-15
>seq4
Length=676188
Score = 223 bits (246), Expect = 4e-53
Identities = 1114/1743 (64%), Gaps = 51/1743 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| | ||||| ||||| |||| ||| || || ||||||| ||
Sbjct 639978 CCCCAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTC 640037
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
|||| || ||| | |||||| | | |||| ||||| |||| || || |||
Sbjct 640038 CTGGAAACCTACCATCTCATGTCCAGCAAACTCTTCACACACGCCTCACCCACACTATTC 640097
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
|||||||| ||||| | || |||| ||| ||||| | | | ||||||||
Sbjct 640098 AACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGGAC 640157
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
||| | ||||| || | ||| |||| || ||| ||||| ||| |||||||
Sbjct 640158 AGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGT 640217
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909
|||||||| || | |||| | | |||| | ||| || || || || |
Sbjct 640218 GGTATCGGCTTGAATGTCCACCGCATTCGCGCCACT--GGCTCCTACATTGCCGGCACCA 640275
Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969
| || || ||||| | ||||| |||||||| || || ||| ||| || | ||||
Sbjct 640276 ACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATG 640335
Query 111970 TAAACCAAGCTGGGCGTCGCAAGGGATCTATCGCAGT--CTAT---CTTG-AGCCATGGC 112023
| |||| | ||| |||| || || ||| | | || |||| |||| ||||
Sbjct 640336 TCGACCAGGGTGGCAA---CAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGC 640392
Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083
|||| ||| | | ||||||||||| ||||| || || || | || || | || |
Sbjct 640393 ACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCG-T 640451
Query 112084 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142
|| || ||| | ||| ||||| |||||||| ||||| ||||||||| | || ||| ||
Sbjct 640452 GCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAG 640511
Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201
| || ||||| |||| | || || || || || ||||| || | || | ||
Sbjct 640512 AACGGTGATTGGACTCTGATGTGCCCCAACGAATGC-CCCGGCCTGGCTGACTGCTACGG 640570
Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGA----AAGTCGGGCGACTGCGA 112257
||||||||||| || ||||| |||||| ||| || ||| || || |||||
Sbjct 640571 CGAGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAG--GGTCG--TGCGA 640626
Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316
| | | || | || | | ||| | | || || || | || || ||||| ||||
Sbjct 640627 CCATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAAT 640685
Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376
|| | ||||| ||||| || ||||| ||| ||||| || || ||||| |||||
Sbjct 640686 CCTTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACA 640745
Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436
||| || |||||||| || || ||||| | || | | | | |||||| |||
Sbjct 640746 ATCCGCAGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCT 640805
Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496
|| || ||| | || || | ||||| || | || || | | | | ||| |
Sbjct 640806 GTTTGCAACTTGGCCTCTCTGGCTCTGCCTGCCTTCGTAGA-CTACAACGAGGGACGCTA 640864
Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555
|| | | || |||||||| || || | || ||||| |||||| | ||
Sbjct 640865 CGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCAT 640924
Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615
|||| || |||||||| || || || || || ||| ||||||| || ||
Sbjct 640925 TGATGTCAACCACTACCCCGTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGAT 640984
Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATT 112674
|||| | || ||||| |||||||| || | ||| || | ||| ||| ||||||| |
Sbjct 640985 TGGTGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCTTGCCTTG-CGCATGCCATTTGAGT 641043
Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734
|| || || || |||| || ||||||||||| || || || || || ||
Sbjct 641044 CCCCTGAGGCCCGTGAGCTCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCA 641103
Query 112735 AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794
|| | || ||||| ||| | || || || ||||||||||| ||||| |
Sbjct 641104 CTGCCTCTGTCGAATTGGCCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCG 641163
Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGA 112852
| || | || | ||||| ||||| ||||||| | |||| | | || | || ||
Sbjct 641164 CCTCCGAGGGCATTCTTCAGTTTGACATGTGGG-ACGTGA-AGCCTTCTGACCTCTGGGA 641221
Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912
||| | ||| ||||| | ||||||||| | || |||| ||| || || | ||
Sbjct 641222 GTGGAATAGTCTGAAGGAGCAGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGC 641281
Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972
|| ||||| || || || ||| | || || | ||||| ||||| ||||| || || ||
Sbjct 641282 CCCCATGCCTACGGCTTCTACCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTA 641341
Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032
|||| | ||||| || | | | ||| || || || || | ||||||||
Sbjct 641342 CACGTCCAACATTTACCAACGCCGTGTCCTGGCAGGTGAATTCCAGGTTGTCAACCCCTG 641401
Query 113033 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCA- 113088
|| || | || ||| || || || || ||||| | | ||||||| | | |||
Sbjct 641402 GCTGCTGAAAGATCTCGTCGACATGGGCCTTTGGTCTGATGCTATGAAGAACCGTATCAT 641461
Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148
|| || | | ||||||||||| ||||| | || || | || || ||
Sbjct 641462 TGCCGAGAAC----GGTTCCATTCAGAATATCCCCAACATCCCGGCCGACATCAAAGCTC 641517
Query 113149 TGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206
| ||| || |||||||||| || | || | ||| | | ||||| || || ||
Sbjct 641518 TCTACAAAACTGTTTGGGAAATTTCTCAACGA--CACGTCGTGCAGATGGCTGCTGACCG 641575
Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAG--TATGAATCTATTCATGGAAAGTCCAACGATG 113264
|||| ||||| || | |||| || | | || | |||| | ||| || |||
Sbjct 641576 TGGTGCTTTCATCGACC--AGTCCCAGTCTCTTAACATTCACATGAAGGATCCCACTATG 641633
Query 113265 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 113324
|||| || |||| |||||| | | | ||||| ||| ||||| ||||| |||||
Sbjct 641634 GGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGGCATGTAC 641693
Query 113325 TAC 113327
|||
Sbjct 641694 TAC 641696
>seq23
Length=320936
Score = 105 bits (116), Expect = 8e-18
Identities = 186/267 (70%), Gaps = 18/267 (7%)
Strand=Plus/Plus
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123
|||||| || ||||||||||| | |||||| ||| ||| | |||| | | |||| ||
Sbjct 129185 GGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGCAAATAG 129244
Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC- 16182
||| || || || | || |||||||||||||| || ||||| | ||||||
Sbjct 129245 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATT------CGGAACC 129298
Query 16183 -ATT----GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237
|| | ||| || ||| ||||||||| || ||||| || | ||| || ||
Sbjct 129299 GCTTACGCTAAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTTTT 129358
Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-C 16294
|| |||||||| |||||||||| || || || ||||||||||| || |||| |
Sbjct 129359 GCCAGTACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTCTC 129418
Query 16295 AAAGTATCTCTCAGGTTGCTTAAGAAA 16321
||| | ||||||| || || |||||
Sbjct 129419 AAACT---TCTCAGGCTGTTTGAGAAA 129442
>seq103
Length=87482
Score = 96.9 bits (106), Expect = 4e-15
Identities = 162/229 (71%), Gaps = 8/229 (3%)
Strand=Plus/Plus
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAG- 102164
|| |||||| || |||| ||||| || ||||||||||| ||| || | ||||||
Sbjct 35055 AATAGTTCCTTGCATTCGCAAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGA 35114
Query 102165 -TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
|| | ||| || |||| | | || ||||| || || ||||| ||||||
Sbjct 35115 ATCCAG---CTTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAG 35171
Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282
||| | || ||| |||| | ||||| |||||||| || | ||||| |||||| ||
Sbjct 35172 CGGTGCTTT-TGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCT 35230
Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||||||||| | ||||| ||||| ||||| || ||| ||| |||||
Sbjct 35231 TCTCCAACGAATTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGC 35279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620721193887760
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